Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01383 ATGAGCACCATTTGTGCAGACCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCCCTCAAAAAATCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCGGACATGTTTTCCGACGACATCCTCCTGCACAAGTACCTCCACCACAGCAAATCCATGGACTCCGAGGACTCTGATGACGTCGGAGACCCTTATTCCTCGGACGAATTCCGAATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCTCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGCGACGGTGTGTCCGGAGTATCGCCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGTTGCACCCTTCAAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCGAACTGAGGGTTTTGCCTCCCCAAGACATCAACAAGAAGAAAAAGTGCAGCAATATGAGTCCTCATAATAATAACAAGAATAACAGTAACCATTGTTGTTTGTTTTGTCATTGTTCATCCACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCCTCTGCCTCTTCCCCTTCCCCTTCTAGGTTTGAGCCTGGCCACCGTCATGGTGTGGTGAGCTACAAGGATGTTTTCTCTGAGCTTATGTGCTCCATGGAAGCTTTGAATTTTGGTGAGGCTTCATCTGTGTCTGCTTCCAAGCCTCACACTCTGTCTTGGCTTGATGTCTCTGAGGATCATAAACAGTTCAATGTTCATTCACCAACCATGGCTACTTGTGGAAGGTTTTCGAGGGATGAAAATGGAAGCTTTTCCATCAATAGAAATGGAAGATTTTTTAGGGAAGAAAGTGGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTCGCGTGGGTTAATGACTTGCTGATGTAG 1068 0.5019 MSTICADHKFQLQPSHQLLSLKKSLRDLDIPPRKLLTRRSAADMFSDDILLHKYLHHSKSMDSEDSDDVGDPYSSDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSATVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRELRVLPPQDINKKKKCSNMSPHNNNKNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSASSPSPSRFEPGHRHGVVSYKDVFSELMCSMEALNFGEASSVSASKPHTLSWLDVSEDHKQFNVHSPTMATCGRFSRDENGSFSINRNGRFFREESGGVVDDVIAPDLAWVNDLLM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01383 355 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vimu5g01383 355 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Vimu5g01383 355 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vimu5g01383 355 Gene3D - 116 181 - -
Vimu5g01383 355 PANTHER UNKEMPT FAMILY MEMBER 50 354 IPR045234 -
Vimu5g01383 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01383 Vimu-Chr5 24537230 24539150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01383 73 243 C2H2 Transcription Factor Family AT5G12850 49.708 4.70e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g01383 zf-CCCH 6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01383 K23047 - gmx:100820375 500.745