Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu5g01381 | ATGGTCGCCAAGGACAAAACGGTCACAAAGAATAAGAAGCCAGCCAATGCCGCCGACGAGGTTCACTACCGCGGTGTCCGAAAGCGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGCAAGAAATCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCCGCAACTTCCGTGGCCCCAAAGCTAAAACCAACTTCCCCCTTCTCCCCGACACCGTCGCCGCCGTCACCACCAACAACAACAACCTAAACCGGAACAACAACAACAACGTAACAAACAACGCTAGCAGCAGCAGCAGCCCTAGCCAGAGCAGCACCGTGGAGTCCGCCACCCCGGAGCGTGACGTCACGCGCCTTGCCGCCACTGCCGTCATCGACCGCTTCCCCTTCCTCCCGATCCAGCAGCAGATGCTCGTGACCCCGGTCGCTCCCGTGCGCCCGGTTTTTCTCCTGGACCGGGCCCATTACCTGACCCACCAGTTCCCCTTCCGGTTCGAACCGGCCCCGGTTCAGAGCGACTCCGATTCGTCCTCCGTTGTCGATTGCCAACCCAAAAGAGAACTCAATCTCGATCTCAACCTGGCTCCTCCAATGGATTATTAA | 639 | 0.6182 | MVAKDKTVTKNKKPANAADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPLLPDTVAAVTTNNNNLNRNNNNNVTNNASSSSSPSQSSTVESATPERDVTRLAATAVIDRFPFLPIQQQMLVTPVAPVRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDY | 212 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu5g01381 | 212 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vimu5g01381 | 212 | MobiDBLite | consensus disorder prediction | 90 | 124 | - | - | |
Vimu5g01381 | 212 | FunFam | Ethylene-responsive transcription factor 2 | 21 | 80 | - | - | |
Vimu5g01381 | 212 | Gene3D | AP2/ERF domain | 21 | 80 | IPR036955 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 13 | 164 | - | - | |
Vimu5g01381 | 212 | SUPERFAMILY | DNA-binding domain | 22 | 80 | IPR016177 | GO:0003677 | |
Vimu5g01381 | 212 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | Pfam | AP2 domain | 22 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu5g01381 | 212 | MobiDBLite | consensus disorder prediction | 90 | 126 | - | - | |
Vimu5g01381 | 212 | CDD | AP2 | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu5g01381 | Vimu-Chr5 | 24501222 | 24501860 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu5g01381 | 3 | 210 | AP2-EREBP Transcription Factor Family | AT5G44210 | 45.755 | 7.35e-50 | 159 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vimu5g01381 | AP2 | 5.8e-16 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu5g01381 | K09286 | - | gmx:100775465 | 263.462 |