Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01364 TTGATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACCAAAGAGAGATGGAGGGTTTCTCGATGGCAGCAAAAACAGCATCAGATGGTGATGACTTTGGTGAGCTTTCTGAAGGGAACTTATTGGAGAGCATCAACTTCGACGATCTCTTCGTCGGCATCGACGTTGGCGGAGATGTCTTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGGGAAGAGTCATCGGAGATGAACTCATCAGGAGAGAACAGCAAGGAGGAGAATGATCGAAACTGTGTTCTGACTGTTTCAAAGAAGGAAGTAGAGGAAGATAAAAGTTCTTGTGCTGCTTCAGGTCAAGACTCGGGGTCAAACCGAGGAGAGGAGATAGTGAGCAAGAATGGTGAATCGGTGGTGGTGAATCCTGCGCCAAAAGAAGGTGGAAAAGGAAGAAAATCTTCATCGGCTCAGTTGAAGAATAATAGTAATAGTAATAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTTCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTTTAACTCGTCATAACATTGCAAGCCACCTTCAAAAATATAGATCTCATAGGAAACACCTTCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGGAGGCACATATATGGTGTTGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCCACCATGGGATACCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTACACGTGTGGGGGCACCCTTCCTTCATGCACGTGTGGCCCAAACATCTTCCACCTTCACCACCACTCTCATGGCCATCACCTGCACCACCACAAGACCCTTCATTTTGGCACCAAACGGCTCCAAATGCTCTAATACCAGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCATGTCCCTGGCATCCCACCCCATGCCATTTACAAAGCAGATCACAGCATTGGCATCCATGGTCCTCGTCCTCTATTAGATTTTCACCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCCTTACCTCTTGGACTGAAGGCTCCAGCAATTGACAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCTTCCAGTGCTTGA 1260 0.4778 MMLAVAPLRSIKDEKNQREMEGFSMAAKTASDGDDFGELSEGNLLESINFDDLFVGIDVGGDVLPDLEMFGEFSVSAGEESSEMNSSGENSKEENDRNCVLTVSKKEVEEDKSSCAASGQDSGSNRGEEIVSKNGESVVVNPAPKEGGKGRKSSSAQLKNNSNSNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRHIYGVGKREVSPWLAPTMGYPPPMTTMHHFRPLHVWGHPSFMHVWPKHLPPSPPLSWPSPAPPQDPSFWHQTAPNALIPGTACFPQPLTPTGFGTHHVPGIPPHAIYKADHSIGIHGPRPLLDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPAIDSVMSELQRQGIPNIPPSSA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01364 419 Gene3D - 169 230 - -
Vimu5g01364 419 MobiDBLite consensus disorder prediction 153 171 - -
Vimu5g01364 419 Pfam Myb-like DNA-binding domain 175 224 IPR001005 -
Vimu5g01364 419 MobiDBLite consensus disorder prediction 86 114 - -
Vimu5g01364 419 SUPERFAMILY Homeodomain-like 170 229 IPR009057 -
Vimu5g01364 419 PANTHER TRANSCRIPTION ACTIVATOR GLK1 2 418 IPR044825 GO:0003700|GO:0045893
Vimu5g01364 419 FunFam Two-component response regulator 168 231 - -
Vimu5g01364 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Vimu5g01364 419 MobiDBLite consensus disorder prediction 76 175 - -
Vimu5g01364 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 228 IPR017930 -
Vimu5g01364 419 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01364 Vimu-Chr5 24332068 24337526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01364 2 360 G2-like Transcription Factor Family AT5G44190 40.051 1.49e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu5g01364 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01364 - - gmx:100777595 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01364 5 24332068 24337526 Vimu4g01102 4 9498245 9501652 PCT