LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01364	TTGATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACCAAAGAGAGATGGAGGGTTTCTCGATGGCAGCAAAAACAGCATCAGATGGTGATGACTTTGGTGAGCTTTCTGAAGGGAACTTATTGGAGAGCATCAACTTCGACGATCTCTTCGTCGGCATCGACGTTGGCGGAGATGTCTTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGGGAAGAGTCATCGGAGATGAACTCATCAGGAGAGAACAGCAAGGAGGAGAATGATCGAAACTGTGTTCTGACTGTTTCAAAGAAGGAAGTAGAGGAAGATAAAAGTTCTTGTGCTGCTTCAGGTCAAGACTCGGGGTCAAACCGAGGAGAGGAGATAGTGAGCAAGAATGGTGAATCGGTGGTGGTGAATCCTGCGCCAAAAGAAGGTGGAAAAGGAAGAAAATCTTCATCGGCTCAGTTGAAGAATAATAGTAATAGTAATAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTTCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTTTAACTCGTCATAACATTGCAAGCCACCTTCAAAAATATAGATCTCATAGGAAACACCTTCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGGAGGCACATATATGGTGTTGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCCACCATGGGATACCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTACACGTGTGGGGGCACCCTTCCTTCATGCACGTGTGGCCCAAACATCTTCCACCTTCACCACCACTCTCATGGCCATCACCTGCACCACCACAAGACCCTTCATTTTGGCACCAAACGGCTCCAAATGCTCTAATACCAGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCATGTCCCTGGCATCCCACCCCATGCCATTTACAAAGCAGATCACAGCATTGGCATCCATGGTCCTCGTCCTCTATTAGATTTTCACCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCCTTACCTCTTGGACTGAAGGCTCCAGCAATTGACAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCTTCCAGTGCTTGA	1260	0.4778	MMLAVAPLRSIKDEKNQREMEGFSMAAKTASDGDDFGELSEGNLLESINFDDLFVGIDVGGDVLPDLEMFGEFSVSAGEESSEMNSSGENSKEENDRNCVLTVSKKEVEEDKSSCAASGQDSGSNRGEEIVSKNGESVVVNPAPKEGGKGRKSSSAQLKNNSNSNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRHIYGVGKREVSPWLAPTMGYPPPMTTMHHFRPLHVWGHPSFMHVWPKHLPPSPPLSWPSPAPPQDPSFWHQTAPNALIPGTACFPQPLTPTGFGTHHVPGIPPHAIYKADHSIGIHGPRPLLDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPAIDSVMSELQRQGIPNIPPSSA	419

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu5g01364	419	Gene3D	-	169	230	-	-
Vimu5g01364	419	MobiDBLite	consensus disorder prediction	153	171	-	-
Vimu5g01364	419	Pfam	Myb-like DNA-binding domain	175	224	IPR001005	-
Vimu5g01364	419	MobiDBLite	consensus disorder prediction	86	114	-	-
Vimu5g01364	419	SUPERFAMILY	Homeodomain-like	170	229	IPR009057	-
Vimu5g01364	419	PANTHER	TRANSCRIPTION ACTIVATOR GLK1	2	418	IPR044825	GO:0003700\|GO:0045893
Vimu5g01364	419	FunFam	Two-component response regulator	168	231	-	-
Vimu5g01364	419	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	172	226	IPR006447	GO:0003677
Vimu5g01364	419	MobiDBLite	consensus disorder prediction	76	175	-	-
Vimu5g01364	419	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	169	228	IPR017930	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01364	Vimu-Chr5	24332068	24337526	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g01364	2	360	G2-like Transcription Factor Family	AT5G44190	40.051	1.49e-67	217

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Vimu5g01364		Myb_DNA-binding	5.3e-08	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01364	-		-	gmx:100777595	642.114

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g01364	5	24332068	24337526	Vimu4g01102	4	9498245	9501652	PCT

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