Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g01352 | ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAAGAACGCCAAAGACGATGACTTGAAGAAGGCTTATAGAAAACTTGCTATGAAATGGCACCCGGATAAAAACCCCAACAACAAAAAGGAAGCCGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTGCTTAGCGATCCTCAAAAGAAAGCTATTTATGATCAATATGGAGAAGAGGGTCTGAAAGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTACATACTTTTCTACTGGAGATGTCCCCGGATCCTTTCGGTTCAATCCAAGGAATGCAGATGACATTTTTGCAGAATTTTTTGGCTTCTCAAGTCCATTTGGAGGAATGGGTGGGAGAGGTGGTGGTGGCGGTATGAGATCAAGGTTCCCTGGTGGGATGTTTGGTGATGATATGTTTGCATCTTTTGGGGATGGAGCGGTACATATGAGTCAAGGTGCTCCTCGGAAAGCTGCTCCAATTGAGAACAAGTTGCCTTGCACTCTTGAGGAGATATATAGAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCCAGTGGAAGAGATCTTAACCATTAATGTGAAGCCTGGTTGGAAGAAGGGAACAAAGATCACCTTCCCTGAAAAGGGAAATGAACAGCCAAACGTGACGCCAGCTGATCTCGTCTTCATCATTGACGAAAAACCACATGGTGTCTTCACCCGCGATGGAAATGACCTTGTTGTAACGCAGAAGATTTCCCTTGCAGAGGCCTTAACTGGTTATACAGTCCACCTAACCACCCTGGATGGTAGAAACTTAACCATACCAATCAGCAATGTTATTCATCCCAGTTATGAAGAGATTGTTCCAAGAGAAGGCATGCCATTTCCAAAAGATCCATCAAAGAAGGGAAACTTGAGGATAAAGTTTAACATCAAGTTTCCAACTAGGCTCACTGATGAGCAAAAAGCAGGAATGAAGAAGCTATTGGCTGCATGA | 1032 | 0.4409 | MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGAGTTYFSTGDVPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGMRSRFPGGMFGDDMFASFGDGAVHMSQGAPRKAAPIENKLPCTLEEIYRGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRNLTIPISNVIHPSYEEIVPREGMPFPKDPSKKGNLRIKFNIKFPTRLTDEQKAGMKKLLAA | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01352 | 343 | Gene3D | - | 247 | 327 | - | - | |
| Vimu5g01352 | 343 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Vimu5g01352 | 343 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Vimu5g01352 | 343 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Vimu5g01352 | 343 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Vimu5g01352 | 343 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Vimu5g01352 | 343 | Gene3D | DnaJ domain | 3 | 125 | IPR036869 | - | |
| Vimu5g01352 | 343 | SUPERFAMILY | Chaperone J-domain | 3 | 130 | IPR036869 | - | |
| Vimu5g01352 | 343 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Vimu5g01352 | 343 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 162 | 254 | IPR008971 | GO:0006457|GO:0051082 | |
| Vimu5g01352 | 343 | Gene3D | - | 167 | 245 | - | - | |
| Vimu5g01352 | 343 | Pfam | DnaJ C terminal domain | 168 | 326 | IPR002939 | - | |
| Vimu5g01352 | 343 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Vimu5g01352 | 343 | FunFam | Dnaj homolog subfamily b member | 164 | 245 | - | - | |
| Vimu5g01352 | 343 | FunFam | DnaJ subfamily B member 13 | 3 | 125 | - | - | |
| Vimu5g01352 | 343 | FunFam | DnaJ subfamily B member 13 | 247 | 327 | - | - | |
| Vimu5g01352 | 343 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Vimu5g01352 | 343 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 249 | 335 | IPR008971 | GO:0006457|GO:0051082 | |
| Vimu5g01352 | 343 | CDD | DnaJ_C | 166 | 329 | - | - | |
| Vimu5g01352 | 343 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Vimu5g01352 | 343 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 341 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g01352 | Vimu-Chr5 | 24146741 | 24149401 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01352 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 39.130 | 5.71e-10 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g01352 | K09510 | - | gmx:100797487 | 590.497 |