Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01347 ATGTTCGTGTTTTTTCTTTTCTTCCTCTTCCTTCTCTCTCCTCCGCGATTCTCTCTCTCTCTAACCCAAGACGGCCTTTTCCTCCTCCAGGCGCGCAGCCGCCTCTCCGACCCCCACAACTCACTCGCCTCCTGGAACCCCGCCGCCTCCACCCCCTGCCAGTGGAGGGGCGTCACCTGCAACAATCATTCCGCCGCCGTCATCGCCCTCGATCTCTCTTACTCCTTCCTTTCCGGCCCCTTCCCCGCCGCCCTCTGCCGCCTCCCCTCCCTCTCTTCCCTTAACCTCTCTTACAACCTCATCAACTCCACCCTCTCCGCCGTCTCCCTCTGCCGCTCCCTCCTCCATCTCGACCTCTCCCAAAACGTCCTTGTGGGTCCCATCGACTCCTTCGCCGCACTCACCTCCCTCCGCTACCTCGACCTCTCCGGCAACAACCTCACCGGAGAAATTCCTGAGACCCTCACCGCCCTACCCCACCTCGAAACGCTAAACCTCGTTAGCAATCTTCTCACAGGTACCATCCCCGCTTCACTCGGTAACCTTACTTCGCTGAAACGCCTTCAACTTGCTTACAACTTGTTCAAGCCGGGCCCCATGCCGAGTGAACTCGGGAAACTCGGAAACCTTGAAACGCTTTTTCTCGCTCTGTGCAACCTTCAAGGTCCCATTCCAGACACCTTCAGCAATCTCGTTAACTTGACAAACCTCGACTTGTCTCAGAACAGCATCACCGGTAACATCCCGCAATGGTTCACGCGTTTCACGCGCGTGACCCAAATTGAGCTTTTCGAAAACTCGCTCTCCGGGGAGCTACCCAGGGGAATGTCGAAGATGACGAGTTTGAAACTATTCGACGCGTCGAGGAATGAGTTGACTGGGACGATTCCGACCGAGTTGTGCGAGTTGCCACTCCTGTCACTGAATTTATTTGAGAACAAACTCGAAGGGTTTTTGCCGGGGGCCATTGCGCGTTCCCCGAACCTCTCTGAACTCAAACTTTTCAGTAACAGACTCATTGGAACGTTGCCGAGTGATTTGGGAAGTAACTCACCGTTGAACCATATTGACGTTTCGTATAACCGGTTTTACGGTGAAATTCCGGCGAACATTTGCCGGCGGGGGCAGCTTGAGCAGCTACTCTTGATGTACAATTCGTTTTCGGGTGAAATTCCCGAGAGTCTCGGAAAATGCACCAGTTTAATGAGGGTTCGGTTAAGAAACAATAATCTCTCGGGAAGTGTTCCTGAAGGGGTTTGGAGTTTGCCCCGTTTGCATTTGCTTGAGCTTTTGGAAAATCACTTTTCTGGGCACATTTCTAAGGCGATTTCTGGCTCTTCCAGCTTGTCAAATTTGTTGGTTTCAAATAACCGGTTTTCTGGGTCGATTCCTGAGGAAATCGGGTTATTGGACAATCTTGTGGAGTTTGCAGCTAGTAATAATAATCTCTCGGGTCAGATTCCAGGGAGTTTGGTGAAGTTGAAGCAGTTGGTTAATCTCGACCTTAGTTCTAATCATCTTTCTGGTGATCTTAATTTTGGTGGAATTGGTCACTTGAGTAAGGTCACTGACCTTAATCTGTCACATAATAGGCTGGATGGAAATGTTCCAAGTGAATTAGGAAGCTTTCCTGTGCTTAATTATCTCGATCTTTCTTGGAACAATTTCTCGGGAGAGATCCCATTGCAGTTGCAAAATTTGAGGCTATCTGAGCTGAACTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCTTCTTTATGCCAATGCCAAGTACAAAACGAGTTTTATAGGGAATCCTGGTCTCTGTAGTCATCTCCCTGGACTTTGTAATTGTTACGGTAGGAATAAGAACTGGAGGCACACGTGGATTTTATGGTCCATTTTTGTGCTTGCTGGAGTTGTGTTCATTATTGGGGTGGCTTGGTTTTACTTCAGGTACAGGAAGGTGAAGAAATTGAAGAAAGGGTTATGCACTTCGAGTTGGAAGTCGTTTCACAAGCTGCAGTTTAGTGGGTTAGAGGTTGCTAAGTTGCTGAATGAGGCCAATGTGATAGGAAAGGGAGCATCCGGGAAGGTGTACAAGGTGGTGCTCAGCAACGGTGAGGTGGTGGCAGTGAAAAAAATTAGTGTAGGAGCCCCAAAGAAAGTGGATGAAAATGGTGAATACGCATACACTCGGAGGGTGAGTGAGAAGTGTGACATATACAGTTTTGGAGTGGTGATTTTGGAATTAGTAACTGGGAGACCCCCCATTGATCCAGAGTATGGTGAAAATGGTTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGAGTGGATCATGTAGTTGATCCTACATTGGACTACAAATTCAGGGAAGAAATGAGCAAGGTGCTGAGTGTGGGTCTGCAGTGCACCAGTTCCAACCCAATAACTCGCCCCACAATGAGAAAAGTGGTTAAAATGCTTCGTGAGGTAACAGCAGTACCCAAACGCACAAGTGTAAACGATGGAAATGAATGA 2508 0.4872 MFVFFLFFLFLLSPPRFSLSLTQDGLFLLQARSRLSDPHNSLASWNPAASTPCQWRGVTCNNHSAAVIALDLSYSFLSGPFPAALCRLPSLSSLNLSYNLINSTLSAVSLCRSLLHLDLSQNVLVGPIDSFAALTSLRYLDLSGNNLTGEIPETLTALPHLETLNLVSNLLTGTIPASLGNLTSLKRLQLAYNLFKPGPMPSELGKLGNLETLFLALCNLQGPIPDTFSNLVNLTNLDLSQNSITGNIPQWFTRFTRVTQIELFENSLSGELPRGMSKMTSLKLFDASRNELTGTIPTELCELPLLSLNLFENKLEGFLPGAIARSPNLSELKLFSNRLIGTLPSDLGSNSPLNHIDVSYNRFYGEIPANICRRGQLEQLLLMYNSFSGEIPESLGKCTSLMRVRLRNNNLSGSVPEGVWSLPRLHLLELLENHFSGHISKAISGSSSLSNLLVSNNRFSGSIPEEIGLLDNLVEFAASNNNLSGQIPGSLVKLKQLVNLDLSSNHLSGDLNFGGIGHLSKVTDLNLSHNRLDGNVPSELGSFPVLNYLDLSWNNFSGEIPLQLQNLRLSELNLSYNQLSGDIPLLYANAKYKTSFIGNPGLCSHLPGLCNCYGRNKNWRHTWILWSIFVLAGVVFIIGVAWFYFRYRKVKKLKKGLCTSSWKSFHKLQFSGLEVAKLLNEANVIGKGASGKVYKVVLSNGEVVAVKKISVGAPKKVDENGEYAYTRRVSEKCDIYSFGVVILELVTGRPPIDPEYGENGLVKWVSSALEHEGVDHVVDPTLDYKFREEMSKVLSVGLQCTSSNPITRPTMRKVVKMLREVTAVPKRTSVNDGNE 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01347 835 Gene3D Transferase(Phosphotransferase) domain 1 707 832 - -
Vimu5g01347 835 SMART LRR_typ_2 231 254 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 88 112 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 519 543 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 134 157 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 279 303 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 158 182 IPR003591 -
Vimu5g01347 835 SMART LRR_typ_2 207 230 IPR003591 -
Vimu5g01347 835 SUPERFAMILY L domain-like 44 308 - -
Vimu5g01347 835 Gene3D Ribonuclease Inhibitor 22 304 IPR032675 -
Vimu5g01347 835 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 182 - -
Vimu5g01347 835 FunFam Receptor-like protein kinase HSL1 304 612 - -
Vimu5g01347 835 PRINTS Leucine-rich repeat signature 137 150 - -
Vimu5g01347 835 PRINTS Leucine-rich repeat signature 494 507 - -
Vimu5g01347 835 Pfam Leucine rich repeat 111 147 IPR001611 GO:0005515
Vimu5g01347 835 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Vimu5g01347 835 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 722 819 - -
Vimu5g01347 835 Gene3D Ribonuclease Inhibitor 305 620 IPR032675 -
Vimu5g01347 835 SUPERFAMILY RNI-like 261 587 - -
Vimu5g01347 835 ProSitePatterns Protein kinases ATP-binding region signature. 685 716 IPR017441 GO:0005524
Vimu5g01347 835 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Vimu5g01347 835 SUPERFAMILY Protein kinase-like (PK-like) 722 823 IPR011009 -
Vimu5g01347 835 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vimu5g01347 835 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 299 - -
Vimu5g01347 835 SUPERFAMILY Protein kinase-like (PK-like) 679 712 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01347 Vimu-Chr5 24100207 24103676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01347 722 825 Receptor kinase-like Gene Family AT4G28490 60.952 6.90e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu5g01347 LRR_8 1.6e-08 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01347 - K08286 gmx:100796415 990.334