Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01344 ATGAAAAAGCTAGCCCTAGAGCAAAGTGCGAGAGAAGTGGATGGATTGCTGCCTTCTTTGGGGAAAAAATACGAACACCCAAGAGCTAAGGCCAGGTGCGAGCGGACCCTGAACGGTGCTGACGTGGAGATGATCGGAGGGCTTGGAAAGGAAGCAACTACTGACCGTCCGATGAAGAGAAGATTAAAGCGTCTCGTGCAAGGTTGTGATGCATCAATTCTCCTGGACGACAGTGCAACATTCACAGGAGAGAAAAACGCATTTCCTAACAGAAATTCAGCGAGGGGCTTCGAAGTTATTGATACCATTAAAACCAACGTTAAAGCTGCTTGCAATGCCACTGTGTCTTGTGCTGATATTCTTGCACTTGCCACAATAGATGGAGTAGTTCTGGCAACAGACGACCGGTTAAACAAGATAATGAATCAGTCATCATACTGGGCCATAATTGGGCCAACTCTTATTATTGGGCTCGTAGCCCATCAATCTAAAAGAAATCTCATTGTCAATTCTCTCCTACTGGGAATCACTCTACTAAGAACTCAGGTTCTTCCACCACATACGCCTAACTTGAGCGTCGGAGTGCCTTTGCAGAGCTTGAAGAGCGTCGGACGGTCCCAACCGAAGAAGAACGAACGGTCGAAGAGCAGAAGAACTAAGCAATCCAGTCCAGCTAAGCGCCAGAAAGCAGTAAAGCCGCGTCATCCAGGTCAATTCCCGATGGTTACCACAAGGAACATGGACAACTACAACTCAGTAGATATGATCAGAGAGCTACAGGCCCATTTAGAGGCGCAAACAAAGCGAGTGGAAGAACAGGCCCAGACGATACGTCAGCAACAAGAATTTCAACAGACACAAGCAAAGCGGATGGAAGAACAAGCACAGATTATACGCCAACAGCAAGAATTGCAACAAAAGCAAGCTGACGAAATCGCCCGACTACGAGCACGACGTCCACCTCTTGAAATATTCGATACCCAGGGAAGCCAGAACGGTGATCAAAGTTCACCCGAGTTATTACCATTTACAGAAGCTGTTATGCAAGCCCCGATGCCAGATCAGCCCCCTCAGCTGATGGAGAAGTTTGACGGTACCTCGGATCTGGATCATCACATCCGGAACTTCGTTGATTACATGGCTTCTACTCCAAAAGTTGAGGCATTAGAGTGGTACTACACACTTCCCCCTAATTCAATAGACAACTTTCGTACTGTCACCAATCTGTTCAAAAGACAGTATGCCATTAACCGAAGGGAGGAGGTGACTCCCGCCGAACTCGTCAATATTAATCAAGGCAAAGATGAGACTTTGAGAGCCTTCGTGCAAAGGTACAATGAAGCGGCGAGACGAGTAAACGGTCAATTTACCCAACTGTCTAAAGCCAGGATACGTCTCGGAGCATTTATATGCCAGACTACCCAATACAATGGAGGAAATCTAAGAGAGATTAACCGAGTACATCAAGATGGAAGATCAGAGAAAATCTCACTCGAAGATTCCCAGAAGGGACTTACAGATGCCCCTAGGTCCCCAATTCGATCATTACGCGAAACTCAACACCCCCGAGAGAAAGAGTGTTCGAAAGAGCTCTACAAACCAATCTCACCTTCGTTCGCAAATGAAACACACCTGTCAATGCGGATAACACTAAGGTATGCCGATATCACGATAATCGGGGACACACTACAGAAGTTAGAAAGACTTATCCGCATAGGATACCTTCGGGAATTCATACGAGAAGGAACAAATCAAGGAAGACGCTCCCCAGAAAGGAGACGGAGAAACGATCGGCCCAAGGACCGATCGAGAAGTCGTTCTGGAGGAAGAGAACATGACAGACCAGCCAGAGGTCGAATCGACATGATCTCTGAAGGTTTCGCCGGAGGAGGAGCCTCATTCTCAGCTCAGAAGAGACATTTGAGAAATCTACAAAGTGTCCACACCATAGGACATCACTATTTGTCAATGCCGGATATCACGTTCACCAATGCGGACTTTCACGCCCCAGATCCAAATCAAGATGACCCTATGGTCATTACCGCACGAATAATGCAATATGACGTTAGCAAAGTCCTGATTGACAAGGGAAGCTCGGTTAACATACTCTATTGGGCCACATTCCAGAAAATGGAACTGTCAGAAGACACAGTAGCACCTTTCAATGAACAGATCTTGGGGTTTGCTGGGGAAAGGATGGATACACGAGGATACTTGGACCTACGAACACGTCTAGGTACAGGTGAAAACACGAAGGAGTTGCGAGTACGGTTCTTATTAGTGGAGGCCAACACCTACAACGCTCTTCTCGGACGACCTTGTTTGAATGCTTTTGGGGCAGATGTATCTACCCCCCACCTGGCGATGAAGTTCCCGTCGGAGAAAGGAATCATATGCACCGTGAGGGCAGACCAAAAGACGGCCCAACAATGTTATGTTGCCAGATTAAAAATGGCACCTTACGTCTCGCAAGACAAAGCAAAACGGCTAGAAACCATATTAGTCGATCTGGATCCCAGAACTAACACGGATGATCAAATTGAACCCCAAGGAGAGGTCAAGACAACAAACAAATACCATCGGGCCGGACTTCAATCGAATGACGAGCGAAATTTGACAGAACTATTAAGAGCCAATTCCAAACAATTTGCATGGAGTGCTGCCGACATGCCAGGAATCCATCCAAGCATCATAACGCATAAACTATCCGTATTCAGAGAAGCCCGACCGGTGGCACAGAAGAAGCGAAGATTTGGCGATGAAAAGAGGGACGTCGTACAAGAAGAAGTCAACAAGTTGATCGACGCAAATTTTATTAGGGAAAACATGGCTGGCAAACGTCGTGATGACTTCACCGATCTCAACAAAGCAAGCCCTAAAGATTCGTATCCTCTTCCCAGCGTTGACAGGCTGGTTGATGGAGTCTCAGGACACGAAGTTTTGAGTTTTCTGAATGCGTACTCGGGATATAATCGAATTCCGATGTACGCTCCAGATCAAGAGAAAACAACGTTCATAACCGAACGCGCCAATTACCATTATCAGGTGATGTCGTTTGGCCTAAAAAATGCAAGAGCTACCTACCAACGTCTTATGGATAAAGTTTTCCATCATCAGATAAGGAGATGCATGGAAGTATATGTGGACGATATGGTCGTACAAAGTCACTCACTTCAACAACACCTCCGGGATTTGGGGGAAGTCTTCCAACAGATAAAACACTATTATATGCGTCGTGGCCGATGGGATATCTCCAGCGGTCGGTTATAA 3270 0.4651 MKKLALEQSAREVDGLLPSLGKKYEHPRAKARCERTLNGADVEMIGGLGKEATTDRPMKRRLKRLVQGCDASILLDDSATFTGEKNAFPNRNSARGFEVIDTIKTNVKAACNATVSCADILALATIDGVVLATDDRLNKIMNQSSYWAIIGPTLIIGLVAHQSKRNLIVNSLLLGITLLRTQVLPPHTPNLSVGVPLQSLKSVGRSQPKKNERSKSRRTKQSSPAKRQKAVKPRHPGQFPMVTTRNMDNYNSVDMIRELQAHLEAQTKRVEEQAQTIRQQQEFQQTQAKRMEEQAQIIRQQQELQQKQADEIARLRARRPPLEIFDTQGSQNGDQSSPELLPFTEAVMQAPMPDQPPQLMEKFDGTSDLDHHIRNFVDYMASTPKVEALEWYYTLPPNSIDNFRTVTNLFKRQYAINRREEVTPAELVNINQGKDETLRAFVQRYNEAARRVNGQFTQLSKARIRLGAFICQTTQYNGGNLREINRVHQDGRSEKISLEDSQKGLTDAPRSPIRSLRETQHPREKECSKELYKPISPSFANETHLSMRITLRYADITIIGDTLQKLERLIRIGYLREFIREGTNQGRRSPERRRRNDRPKDRSRSRSGGREHDRPARGRIDMISEGFAGGGASFSAQKRHLRNLQSVHTIGHHYLSMPDITFTNADFHAPDPNQDDPMVITARIMQYDVSKVLIDKGSSVNILYWATFQKMELSEDTVAPFNEQILGFAGERMDTRGYLDLRTRLGTGENTKELRVRFLLVEANTYNALLGRPCLNAFGADVSTPHLAMKFPSEKGIICTVRADQKTAQQCYVARLKMAPYVSQDKAKRLETILVDLDPRTNTDDQIEPQGEVKTTNKYHRAGLQSNDERNLTELLRANSKQFAWSAADMPGIHPSIITHKLSVFREARPVAQKKRRFGDEKRDVVQEEVNKLIDANFIRENMAGKRRDDFTDLNKASPKDSYPLPSVDRLVDGVSGHEVLSFLNAYSGYNRIPMYAPDQEKTTFITERANYHYQVMSFGLKNARATYQRLMDKVFHHQIRRCMEVYVDDMVVQSHSLQQHLRDLGEVFQQIKHYYMRRGRWDISSGRL 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01344 1089 CDD RT_LTR 950 1075 - -
Vimu5g01344 1089 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 Pfam Retrotransposon gag protein 387 461 IPR005162 -
Vimu5g01344 1089 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 889 940 - -
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 211 233 - -
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 514 529 - -
Vimu5g01344 1089 Gene3D - 60 146 - -
Vimu5g01344 1089 SUPERFAMILY DNA/RNA polymerases 897 1075 IPR043502 -
Vimu5g01344 1089 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 975 1075 IPR000477 -
Vimu5g01344 1089 CDD retropepsin_like 691 776 - -
Vimu5g01344 1089 ProSiteProfiles Plant heme peroxidase family profile. 65 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 Gene3D Acid Proteases 677 800 IPR021109 -
Vimu5g01344 1089 SUPERFAMILY Heme-dependent peroxidases 66 133 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 Coils Coil 256 318 - -
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 492 529 - -
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 190 205 - -
Vimu5g01344 1089 Pfam Peroxidase 65 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 583 620 - -
Vimu5g01344 1089 Gene3D - 941 1079 IPR043128 -
Vimu5g01344 1089 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 264 1072 - -
Vimu5g01344 1089 MobiDBLite consensus disorder prediction 190 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01344 Vimu-Chr5 23961438 23971030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01344 65 130 Peroxidase AT5G05340 68.182 9.02e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01344 - - vra:106753157 785.793