Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01339 ATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAGCTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACAGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGCGAGAAGTGCTCAAAGCGTTATGCCGTGCAGTCGGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATATAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGAGTAAATGCATCATCAGACATGAACAGTTCTTTAGGGGGTAACGTTGGTTACAACGTGATTGGAACTTCCCTAGGCCATAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCATCTCCTCAGGCTCAAGAAACAATGGTCAATAACAATTTGAGTGAGATTCATCAACTTGGGTCTTCTACAAGCTCAGCCACGGCATATGGTGGCAACTCACTGGTCCAATGCTCAAATTTTCCACCTTCAAACTATCAACTAAGTTGGGTGTTCAGGACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAGCAAGCACAACTACATTAGGAAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAACACCAACCCCATCAAACATGTTCTTCAGCAAACATGTCAGCCACTGCTTTGTTGCAAAAAGCTGCTCAGATTGGATCAAGCTCCAGTGACCCTTCATGGCTTGGTAGCATAGGTTTGAAATGTGGTAGCAGCGTTCAAGGTCAAGATGGGGATAGCAGTAACAAGTTCGGTGGCATGTACGGTTCAAGCTTAGTTCTTAGCACACTTGGGACTGAACCAGATAACTCTGCATGTGACTTGTCACATATGCACCCTCCCAAACGTAGACACGTACTAAATGAAGAAAATGGAGGGGGGCAATTCAGGGATTTCCTGGGTGTTGGTGTGCAAAACCATTTGCCACACTTCATCAATCAACAGGTGGATTTGATTTGA 1224 0.4469 MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDMNSSLGGNVGYNVIGTSLGHNMATHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSSPQAQETMVNNNLSEIHQLGSSTSSATAYGGNSLVQCSNFPPSNYQLSWVFRTKLSNDSNIQKLTASTTTLGNSSVPSLYSSQHQPHQTCSSANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSVQGQDGDSSNKFGGMYGSSLVLSTLGTEPDNSACDLSHMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPHFINQQVDLI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01339 407 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Vimu5g01339 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vimu5g01339 407 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vimu5g01339 407 Gene3D Classic Zinc Finger 39 130 - -
Vimu5g01339 407 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vimu5g01339 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 392 IPR031140 -
Vimu5g01339 407 FunFam Zinc finger protein MAGPIE 2 29 - -
Vimu5g01339 407 Gene3D Classic Zinc Finger 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01339 Vimu-Chr5 23822215 23824254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01339 1 393 IDZ Gene Family AT1G03840 47.817 1.69e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g01339 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01339 K25870 - gmx:100790620 687.182