LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g01336	ATGTATGTAGGACAAGCGTTGATGAAGATTAAGCTTCATTTAGCAATAGACCTGCAGGAGAATAAACTTACTGGTCAAATTCCGGATGAAATTGGGAACTGCACTGCACTTATTCATCTAAATTTAAAGAGTAATCAGTTGACTGGTCCGACCCCTTCAACTTTAACCCAAATTCCTAACTTGAAGACTCTCGATCTTGCACGAAATAGACTCATTGGTGATATTCCAAGGCTACTTTACGGGAATGAAGTCCTGCAGTACCTTGATGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGCACAAATTTTGAAGTCCTGTCACTTCAAGGAAATAGATTAACTGGTAAGATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGTCATTTTGGATTTGAGTGAGAATGAGCTGATTGGACCCATTCCTCCCATACTAGGCAATCTGTCTTTTATTGGCAAGCTGTACCTTAATGGAAACATGATCACTGGACCAATACCTCCAGAACTTGGCAATATGTCAAGACTAAACTACCTGCAATTGAATGACAATAAACTATTATATTTCTACTTTGTATTTTGGAACTTAAGCCATAATAGTCTTCAGGGTCCCTTGCCTGCTGAATTTGGGAATTTTAAAAGCATACAAACCATCGATATCTCATTCAACCATCTATTGGGTAGTATACCTCCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGATTTTAAACAACAATGATTTGCATGGGAAGATTCCAGACCAGCTTACAAATTGCTTAAGTCTTAACTTCCTGAATGTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCCCAGTTTTCAGCTGACAGCTTCATTGGAAATCCATTGTTATGCGGAAATTGGTCAGGATCCATATGTGATCCTTATATACGAAAATCCAGAGTGGTTTTCTCAAGGGCTGCAGTTCTTTGTCTCATAGTTGGTACCATCCTATTTTTGGCGATGGTAACGGTTGCTCTCTACATATCAAGCCAATTCAAGGAATTGATTAAAGGATCCAGGGGAACTGAACAAGAGCCATCCACACTTGTAATTCTTCATATGGGCTTGGCCAACCACACCCTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAACTATATTGTAGGATATGGTGCCTCAGGTACCGTGTACAAGTGTGCTTTGCAGAATTTCCGGCCAATTGCAATTAAACGACTACACAACCAGCATCAACACAACTCAAGCGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACACAGGAACCTTGTCACTTTGTATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGGTCCCTTGGAAACGGTAAAACTTGATTGGAAAGCACGCTTGAGGATTGCTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATACACGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCTTTTCCAAATGTTTGTCAACTGCAAGAACACATACTTATTCTGACAATCTAATTTTTATCTATAATGTTAAATTTTTCATGTTTTACTTTCTTAGTAGTTATATTATAGTTCCAAATCCTTTAGTTGCTCCACCGGATTCTCCTGCTTGGACTCCACCAGTTGCACTTGGATTTGCTGCTCCAGTGGTTGCTCCACCAACCGATTCTCCTGCTTGGGCTTCACCAGTTGCACTTGGACTTGATGCTCTAGTGGCTGTTCCATTGACCGATTATCTTGTTTAG	1875	0.4037	MYVGQALMKIKLHLAIDLQENKLTGQIPDEIGNCTALIHLNLKSNQLTGPTPSTLTQIPNLKTLDLARNRLIGDIPRLLYGNEVLQYLDVRGNNLTGTIPDSIGNCTNFEVLSLQGNRLTGKIPEVIGLMQALVILDLSENELIGPIPPILGNLSFIGKLYLNGNMITGPIPPELGNMSRLNYLQLNDNKLLYFYFVFWNLSHNSLQGPLPAEFGNFKSIQTIDISFNHLLGSIPPEIGQLQNLVSLILNNNDLHGKIPDQLTNCLSLNFLNVSYNNLSGVIPLMKNFSQFSADSFIGNPLLCGNWSGSICDPYIRKSRVVFSRAAVLCLIVGTILFLAMVTVALYISSQFKELIKGSRGTEQEPSTLVILHMGLANHTLDDIMRVTENLSENYIVGYGASGTVYKCALQNFRPIAIKRLHNQHQHNSSEFETELETIGSIRHRNLVTLYGYALTPNGNLLFYDYMENGSLWGPLETVKLDWKARLRIAVGASEGLAYLHHDCNPRIIHRDIKSSNILIHENFEARLSDFGFSKCLSTARTHTYSDNLIFIYNVKFFMFYFLSSYIIVPNPLVAPPDSPAWTPPVALGFAAPVVAPPTDSPAWASPVALGLDALVAVPLTDYLV	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g01336	624	ProSiteProfiles	Protein kinase domain profile.	390	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01336	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	507	519	IPR008271	GO:0004672\|GO:0006468
	Vimu5g01336	624	Pfam	Leucine rich repeat	85	143	IPR001611	GO:0005515
	Vimu5g01336	624	Pfam	Leucine rich repeat	16	71	IPR001611	GO:0005515
	Vimu5g01336	624	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	105	194	-	-
	Vimu5g01336	624	Gene3D	Ribonuclease Inhibitor	7	313	IPR032675	-
	Vimu5g01336	624	ProSitePatterns	Protein kinases ATP-binding region signature.	396	418	IPR017441	GO:0005524
	Vimu5g01336	624	FunFam	Os07g0541700 protein	466	549	-	-
	Vimu5g01336	624	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	85	545	-	-
	Vimu5g01336	624	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	196	311	-	-
	Vimu5g01336	624	Gene3D	Phosphorylase Kinase; domain 1	353	465	-	-
	Vimu5g01336	624	FunFam	Leucine-rich repeat receptor protein kinase EMS1	4	101	-	-
	Vimu5g01336	624	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	361	465	-	-
	Vimu5g01336	624	SUPERFAMILY	Protein kinase-like (PK-like)	367	544	IPR011009	-
	Vimu5g01336	624	SUPERFAMILY	L domain-like	12	303	-	-
	Vimu5g01336	624	Pfam	Protein kinase domain	394	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01336	624	SMART	serkin_6	390	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu5g01336	624	Gene3D	Transferase(Phosphotransferase) domain 1	466	558	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g01336	Vimu-Chr5	23730443	23739876	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g01336	15	543	Receptor kinase-like Gene Family	AT5G62230	56.430	0.0	668

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIb	Vimu5g01336		Pkinase	5.6e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g01336	K20718		-	gmx:100800185	668.692