Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01331 ATGGAGTACAAGAGTGAAGAGCGTATCTCAAAACTACTTGGAGCTCAAACCCATGTTTGGAATCACATTTTCAGCTTCATAAATTCCATGTCTCTGAAATGTGCAATTGATTTGGACATACCTGACATCATACACAAGCATGGTGAACCCATGCCAATCTCAAAACTCACTGCTTCAGTATCACTCCATCCTTCCAAAGCCAACTCCATCTACAGGTTGATGCGAATCTTGACCCATTCTGGCTTCTTCTCCGAAGTCAAGGTGAATGAGAATGAGCTTGAAGTGGGTTATGTGTTGACTGATGCATGCACTCTGCTACTTAAGGACAACCCCTTGAGTATGACACCTTTCTTGCATGCCATGCTTGATCCAATTTTGACAAAGCCATGGCATGAATTGGCTACATGGTTCAGGAATGATGATCCCTCGCCATTCCAAACAGAACATGGGATGAAAATCTGGGATTACGCTGGGCGTGATCCAAAACTGAATAATCTTTTCAATGATGCGATGGCAAGTGACGCTGAATTGGTTGGCAATGTGGTGATTGAGAGGTGTGGAGGAGTGTTCAAGGGGTTGGAGTCAGTTGTTGATGTTGGGGGAGGCACAGGTACCATGGCAAAGGCAATTGCCAAATCATTCCCTCACATACACTGCACCGTCTTTGATCTCCCACATGTTGTTGCCGACTTACAAGGAGCTGACAACTTAAAATTTGTTGGAGGTGACATGTTTGAGTCAGTTCCTCCTGCAGATGCCGTTCTATTGAAGTGGATATTACATGACTGGAATGACGAGCAGTGTGTGAGAATACTGAAGAAATGTAAGGAGGGAGTAAAGAGGAAGGTGATTGCGATAGACATGGTGTTGGAGAATGAAAAGCTTGATTATGAATCAACTGAAACACAGCTCATGATTGATATGGTTGTCATGGTGTTGTATCCTGGAAAAGAGAGGACCGAGAAAGAATGGGCTAAGATCATTTTCTCTGCTGGTTTCACTGACTACAAGATAACTCCACTTGTGGGTTTGAGGTCTCTCATCGAGATTTATCCCTAA 1059 0.4372 MEYKSEERISKLLGAQTHVWNHIFSFINSMSLKCAIDLDIPDIIHKHGEPMPISKLTASVSLHPSKANSIYRLMRILTHSGFFSEVKVNENELEVGYVLTDACTLLLKDNPLSMTPFLHAMLDPILTKPWHELATWFRNDDPSPFQTEHGMKIWDYAGRDPKLNNLFNDAMASDAELVGNVVIERCGGVFKGLESVVDVGGGTGTMAKAIAKSFPHIHCTVFDLPHVVADLQGADNLKFVGGDMFESVPPADAVLLKWILHDWNDEQCVRILKKCKEGVKRKVIAIDMVLENEKLDYESTETQLMIDMVVMVLYPGKERTEKEWAKIIFSAGFTDYKITPLVGLRSLIEIYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01331 352 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vimu5g01331 352 Gene3D - 2 106 IPR036388 -
Vimu5g01331 352 Gene3D Vaccinia Virus protein VP39 107 352 IPR029063 -
Vimu5g01331 352 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vimu5g01331 352 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Vimu5g01331 352 PANTHER O-METHYLTRANSFERASE 16 337 IPR016461 GO:0008168
Vimu5g01331 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Vimu5g01331 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Vimu5g01331 352 CDD AdoMet_MTases 196 280 - -
Vimu5g01331 352 FunFam O-methyltransferase ZRP4 108 352 - -
Vimu5g01331 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 350 IPR029063 -
Vimu5g01331 352 Pfam O-methyltransferase domain 130 333 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01331 Vimu-Chr5 23681861 23683001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01331 30 338 Monolignol Biosynthesis Gene Families AT5G54160 34.494 1.55e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01331 - K16040 gmx:100794122 612.068