Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01328 ATGGAAACTGAGGGTGAAGAGCATGCTTCAAAATTGCTTCGAGCTCAAACCCATGTTCGGAATTATATCTTGAAATTCATATACTCTTTTTCTCTTAAGTGTGCTATTGAGTTGAGCATACCAGATATCATACACAACTATGGCCAACCTATGCCACTCTCACAACTCATTGCTTCATTACCACTCCATCCTTCCAAGACTTCCTTTATCACCCGCTTGATGAAAGTTTTGACTCATTCTGGTTTCTTCTCTGAACACCATGTCACCCCAAATCAGCCTGAAGTTATGTATCTACTAACTGATGCATCTATGTTACTCCTAAATGACCATCCCTTTAGTATGAAACCTGTGACGCAATTAATACTTAATCCAGTTATGATCAATCCATGGTTTCAATTCTCTACCTGGTTCACAAATGAAACCCCTTCACCGTTTCACAATGAAAATGGTATGGGATTTTGGGATTTTGCTGGACGTGAGCCTAATATCAATAACCTTTTCAATGAAGTCATGGCTATAGACAGTCGATTGGTTTCCACTGTGGTTATTGAGAAGAATAAGAGATTGTTCGAGGGAATAGAATCATTGGTTGATGTTGGAGGAGGAACAGGGACTATGGCTAAGGTCATTGTTGAGTCCTTCCCACAGGTAAAGTGCATTGTATTTGATCAGCCACATGTTGTTGCAGGCTTGGAAGAATCTCAGAACATAAAATATGTCGGAGGAGACATGTTAGAAGCAATTCCTCAGGCTGATTCCATTATGTTGAAGTGGGTATTACACGACTGGAAGGACAAGGAATGTGTGAAAATACTGAAAAATTGCAAGGAGGCAATGACTAGCGAAGGAAGGGTTGTTATCATAGACATTGTGATGGAGAATAAGAAGGAAGACCATGAATTAACTGAGGTGCAGTTTTTCTTTGATATGCAGATGATGATGTTGGTAGCCGGAAAAGAAAGATACGAGAAAGAGTGGGCCAACCTCATTTTCTCTGCTGGTTTCAGTAACTACAAGATTACTCCCACTCCGGGATTAGTGTCTATTATTGAGGTTTATCCTTAG 1065 0.4009 METEGEEHASKLLRAQTHVRNYILKFIYSFSLKCAIELSIPDIIHNYGQPMPLSQLIASLPLHPSKTSFITRLMKVLTHSGFFSEHHVTPNQPEVMYLLTDASMLLLNDHPFSMKPVTQLILNPVMINPWFQFSTWFTNETPSPFHNENGMGFWDFAGREPNINNLFNEVMAIDSRLVSTVVIEKNKRLFEGIESLVDVGGGTGTMAKVIVESFPQVKCIVFDQPHVVAGLEESQNIKYVGGDMLEAIPQADSIMLKWVLHDWKDKECVKILKNCKEAMTSEGRVVIIDIVMENKKEDHELTEVQFFFDMQMMMLVAGKERYEKEWANLIFSAGFSNYKITPTPGLVSIIEVYP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01328 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Vimu5g01328 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Vimu5g01328 354 Gene3D - 2 106 IPR036388 -
Vimu5g01328 354 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vimu5g01328 354 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Vimu5g01328 354 PANTHER O-METHYLTRANSFERASE 13 339 IPR016461 GO:0008168
Vimu5g01328 354 Gene3D Vaccinia Virus protein VP39 107 354 IPR029063 -
Vimu5g01328 354 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Vimu5g01328 354 Pfam O-methyltransferase domain 130 336 IPR001077 GO:0008171
Vimu5g01328 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 353 IPR029063 -
Vimu5g01328 354 FunFam O-methyltransferase ZRP4 108 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01328 Vimu-Chr5 23566128 23569511 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01328 27 352 Monolignol Biosynthesis Gene Families AT5G54160 30.816 3.65e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01328 - K16040 gmx:100793263 482.256