Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01324 ATGAGTTTTGATAACGAAGATCATTCTTCCAAACTACTTGAAGCTCAAACCCACATATTTAATCAAACTTTTGGTTTCATAAACTCTATGTCCCTTAAATGTGCAATTGATCTGTGCATACCAGATATCATACACAACTATGGCCAATCTATGCCACTCTCAAAACTCATTGCTTCACTTCCAATTCACCCTTCAAAGACTTGCTTTGTTTCCCGTTTGATGCAAATCTTGGTCCATTCTGGTTTTTTCTCTCAACACAGTGATGATAGTAAGCAAGAAGTGAGCTATGCACTAACTGATGCATCAACACTTCTCCTTAAGGAGCACCCCTTTAGTATGACATGTTTGCCACAAGTGATACTTGATCCAGTTTTGGTGAATCCATGGTTTCAGTTCTCCACTTGGTTCACAAATGATGAGCCTACACCATTTCACGCACAGAATGGGATGACTTTTTGGGACTATGCTGGCCGTGAGCCCAAACTCAATCACCTTTTCAATGATGCCATGACAAATGACTCTCGATTGATTTCTAGTGTGATGATTGAGAAGTACAAGGGAGTGTTGGAAGGATTAGAGTCTTTGGTTGATGTTGGGGGAGGGACAGGAACCATGGTTAAGGCCATTGCCAAGTCTTTTCCACTCTTGAAGTGCACTGTTTTCGATCTCCCACATGTTGTTCATGGCTTGCAGGGAACAGATAACATAGAATATGTTGGAGGGGACATGTTTCAAGCAATCCCTTCTGCTGATTCCATCATGCTCAAGACTATAATGCATAACTGGAAAGATGAGGAATGCTTGAAAATCCTGAAGAGATGTAAGGAGGCAATCGGAAAGAAAGAAAAAGGAAAAGTTATTATCATAGACGTGGTGATAGGAAAGCTGAAAGGAAACAGTGTATTGGATCAAACAAAGCTCTACTATGATATGGAGATGATGGTGTTGGTTACTGGAAAAGAGAGAAATGAGAAAGATTGGGCTAAGTTGTTTTTTTCTGCAGGCTTTAATCACTATAAGATAACTCCAGTTCTAGGTTTCAAGTCTCTTATTGAGGTTTATCCATAG 1068 0.3998 MSFDNEDHSSKLLEAQTHIFNQTFGFINSMSLKCAIDLCIPDIIHNYGQSMPLSKLIASLPIHPSKTCFVSRLMQILVHSGFFSQHSDDSKQEVSYALTDASTLLLKEHPFSMTCLPQVILDPVLVNPWFQFSTWFTNDEPTPFHAQNGMTFWDYAGREPKLNHLFNDAMTNDSRLISSVMIEKYKGVLEGLESLVDVGGGTGTMVKAIAKSFPLLKCTVFDLPHVVHGLQGTDNIEYVGGDMFQAIPSADSIMLKTIMHNWKDEECLKILKRCKEAIGKKEKGKVIIIDVVIGKLKGNSVLDQTKLYYDMEMMVLVTGKERNEKDWAKLFFSAGFNHYKITPVLGFKSLIEVYP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01324 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Vimu5g01324 355 PANTHER O-METHYLTRANSFERASE 13 340 IPR016461 GO:0008168
Vimu5g01324 355 Pfam O-methyltransferase domain 129 337 IPR001077 GO:0008171
Vimu5g01324 355 Gene3D Vaccinia Virus protein VP39 106 355 IPR029063 -
Vimu5g01324 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vimu5g01324 355 FunFam Coniferyl alcohol 9-O-methyltransferase 2 105 - -
Vimu5g01324 355 FunFam O-methyltransferase ZRP4 107 355 - -
Vimu5g01324 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Vimu5g01324 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 354 IPR029063 -
Vimu5g01324 355 SUPERFAMILY "Winged helix" DNA-binding domain 9 110 IPR036390 -
Vimu5g01324 355 Gene3D - 2 105 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01324 Vimu-Chr5 23445378 23446580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01324 30 341 Monolignol Biosynthesis Gene Families AT5G54160 33.856 3.10e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01324 - K16040 gmx:100793263 592.038