Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01321 ATGGTGGTGCTTCCCGTGGTGAAGCTGGCAACACTCGCCCTCAAAACCGCGTGTAAACCAATCGCCAGCAGGCTCAAGAAGGAGGCCGGTTACCACCCTAAGTTCCGCAGCTTCATAATCGCCATTGCCCAGGCCAATCACAGATTGACGACGAGAGTGCAGAGAAGAATCTACGGTCGTGCCACCGATGTTGCAATCCGTCCTTTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCAGATTTGCTTGGAGAACTCTTTGTGTTCTCGTATTACCTGAGTTCAGGCAGTATTAGCCGTGAGTTGTGTCGTTGCACTGCTGTAAGGAAAGGAGGCAGTGGGTTAATTGATAGAATAGTGGAAACGGTGAAAGATTGTGACTGGAAGAGGTGGGAAAGGAAGAGAGTGACAAAGGAAATTCAGTATAAAGAAGGAGGCCATTACAGAATACCATTAGTGAATGCTAGCCGTATATGGCAGGGAAAGCTACCGTTCCTTAAATATATGCACAAGGTTGCTGGAGCTGCTGTCATTTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAGGAAGAAATACGTAGACAGGAAATACAGGCAATACAGACGAGGAATGAAGAGTTGGCTAGAGAAATGGAACTTCTTGCACACAAACTTGAAAAGCTGGAACAACTTTCTAGAGGCCGAGGTTTATTTGGCACTCTTAACTTCGGACCCACTCATGAAGGTATGATGAGAGAAAGTTCCAAGGGCAAGTTTGGATCCTCTTCTATTCAATCCATGAAGGAGAAGGAAAAACACCTGGTGGATAAAATTCAAGGGATTTTCAGCAATCTTCAGTGTGCAAGAAAAGAGGGCAGGGGTAGTGACATTGTGATCTTTGAGGAGCAGATGCATCAGCTTCTTCGCGAGTGGAAGGCGGAACTGGAGTCTCCAGCCACCTCCTTAGCTGATGGAAGCTTTGATTCGTTTACCAGTGAACTTGCCCTACTGTTGCAAGTGATTGAGGAGAAAGATGATGCAACTAGTCCATTAACAAAACCTGGGCCGTTGAAGACTGAGCTCCAAACAAGTAACATTAGTGACAACAATTTTCAGTTTTTTCAGGAGAAACATTTTGATGATAACCAACCTCTAGGTCACAATTTCGAAGGCTCTGCTTCAACTCTATACAACAATGCTTTTAATAACTCAGTTATGGGACAGTTGGATTTTCATCCATTCAGTTTAAATGAAGATATGAATCACAACCAAGTTGGTCACAACTCTGATTTGATTGGTGAGGTGGATTTATATCAGGACCTCGGGCATAACACAGAAATTAAACACTCAGAATCAAATCAATTTAGCATAGAAGGTTTTGATTGTAGCCAATTCTTTGGAGCTGAGGATACTGTGCATCATGGAGAAAACATTATACCTAACATTCTTCCAAATATCTGCCCTCCACCATCTGCTTTCTTAGCTCCAAAATGTGCCCTGTGGGACTGTTTCAGACCCGCTCAAGGGGTAGAATGGTGCCGGAACTACTGTAGCAGTTGTCATGAGCTGTTGGCAAATAATGAAGGTCTTCCTGGCATGACTCCAATTTTACGACCAGGGGGCATTGGTGTAAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCGAAAACCCAGGGAAAGGAAGTGGGCATCCCCAGTTGTGAAGGTGCCGCATCAACTAAATCTCCCTGGAACGCTCCAGAGTTCTTTGATCTCTCTTTTCTTGAGGGTGAAGCTGTTAGGGAGTGGCTATTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAACAGAAAACAAAGATCACTTCCAGATTACAGCGGACGCGGTTGGCATGAGTCAAGGAAGCAGGTGATGAAAGAACATGGAGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTGGAGTGGCATTTGTACGAGTATGAGATCAACAACCACGATGGTTGTGCATTATACAGACTAGAATTAAAGCTTGTTGAGAAAAAGAAAAGTCCTAAAGGAAAAGTGACCAAGGAATCTCTTAATGATTTACAGAACAAGATGGGACAGCTTACTGCTGCTGTTCTATCATCTGATGATGGAATACCCATCAAGGGAAAAACAAATGCCAAGTCTGAGAATGATGGATCTCCAGAAAATTAA 2178 0.4408 MVVLPVVKLATLALKTACKPIASRLKKEAGYHPKFRSFIIAIAQANHRLTTRVQRRIYGRATDVAIRPLNEEKAVQAAADLLGELFVFSYYLSSGSISRELCRCTAVRKGGSGLIDRIVETVKDCDWKRWERKRVTKEIQYKEGGHYRIPLVNASRIWQGKLPFLKYMHKVAGAAVIFEVQRSSRSEARKEEIRRQEIQAIQTRNEELAREMELLAHKLEKLEQLSRGRGLFGTLNFGPTHEGMMRESSKGKFGSSSIQSMKEKEKHLVDKIQGIFSNLQCARKEGRGSDIVIFEEQMHQLLREWKAELESPATSLADGSFDSFTSELALLLQVIEEKDDATSPLTKPGPLKTELQTSNISDNNFQFFQEKHFDDNQPLGHNFEGSASTLYNNAFNNSVMGQLDFHPFSLNEDMNHNQVGHNSDLIGEVDLYQDLGHNTEIKHSESNQFSIEGFDCSQFFGAEDTVHHGENIIPNILPNICPPPSAFLAPKCALWDCFRPAQGVEWCRNYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGEAVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNHDGCALYRLELKLVEKKKSPKGKVTKESLNDLQNKMGQLTAAVLSSDDGIPIKGKTNAKSENDGSPEN 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01321 725 Coils Coil 198 225 - -
Vimu5g01321 725 MobiDBLite consensus disorder prediction 612 633 - -
Vimu5g01321 725 MobiDBLite consensus disorder prediction 603 633 - -
Vimu5g01321 725 Pfam Optic atrophy 3 protein (OPA3) 7 91 IPR010754 -
Vimu5g01321 725 PANTHER TRANSCRIPTION FACTOR VOZ1 245 719 IPR039277 GO:0006355|GO:0048578
Vimu5g01321 725 MobiDBLite consensus disorder prediction 704 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01321 Vimu-Chr5 23396372 23406006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01321 244 698 VOZ-9 Transcription Factor Family AT1G28520 51.522 1.02e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Vimu5g01321 OPA3 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01321 - - gmx:100808629 860.907