Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01310 ATGGTGGGTCCCATTCTTCGTTCTCTCTGGTCTTCTACCAGAAAATCCTTCACCCGTTCTTCCCCTCCTTTATTGCACTCGCGCTTCTTCTCACGCGCCTTCGCTGCCGCCCCCGCCGTCGACCCCGCCGCCACAACCAGCGCCTCCTCCATCGACCCCAGCCGCCTCCGCAACGTGGCCGTGATCGCCCATGTAGACCACGGCAAGACAACGCTTATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCTACGAGCGCGCCATGGACTCCATCTCGCTGGAGCGCGAGCGCGGCATCACCATTGCCTCTAAGGTTACGTCTGTTACGTGGAAGGAGAACGAGCTGAACATGGTTGATACTCCCGGGCATGCTGATTTTGGTGGAGAGGTTGAGCGTGTTGTTGGGATGGTGGAGGGAGCAATTTTAGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAGTTTGTTTTGGCAAAGGCCTTGAAGTATGGGTTGCGACCTGTTCTTCTTTTAAACAAAGTAGACCGTCCTTCAGTTACTGAAGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAACAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCCACCACGTTTACCAAGGATCCTCCTGCAGAGACCAAAAATATGTCACAGTTGCTTGATGCAGTTGTAACACATGTCCCAGCACCAAATGCAAACACTGATGCGCCTTTCCAAATGTTGGACTGCGAAGTTCTTATTCAATGGACTGACCTGCCAAAATGTGATGCCACATGGGAACCAGTAGAAACCATCATGAAGCATATTTCTTCTCACCTTGAGGACAAGGTGGCTCTTGTTTGGTGGGGACGGGGGGCATTGTTAGGCCAATTATTGGTAGGGACAAGTGTAACTGCCTCTAAGCAGAATAAAAAAATAGGAGGACGGGGGCTTAATAGTGCTTTTCAGGTTTCGATGATGGAACCTGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATCATCTGGGGTTGTTCGTGTTGGTGACCGGGTTCATGGACTACGGAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGCTGAAACTGATGAAAAAGAAGGGTATAAACATGGTTCTAACTGATTATGCTGGAGCTGGTGATATAATATCAATTGCTGGCCTGTCCAGTCCATCAATAGGCCATACGGTGGCAACTGTGGAGATTATGTCTGCTTTGCCAACAGTTGAATTGGACCCTCCAACAATTTCTATGACTTTCGCTGTGAATGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTGACTGGGGGGAAAATTGGTGATCGACTAATGGCTGAAGCTGAAACCAACCTTGCCATTAATGTGCTTCCTGGCTTATCAGAATCGTTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAGTGGTCAAAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTATCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCCCTGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGTCTGGTTGGGTACAGGAGAGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCGTGCTTTCTATGCATATGAACAATTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTATGTGTCCGTGGGTTTTGGTACTATCACAGCTTATGCATTGCTGACCTTAGAAGCTCGAGGCACTCTTTTTGTAAATCCTGGAATGGAGACGTATGATGGAATGATTGTTGGAGAGCATTCACGGGATACAGATCTTGATGTGAATCCAGCGAACGCAAAAAAACTTAACAATATCCGTACTGCTTTCAAAGATGAGACTGTTAGGCTAACTCCCCCTCGCCTGATGACACTTGAAGAAGCTATAGGTTATGTAGCTTCCGATGAGCTTATTGAGGTTACACCAAAAGCCATTCGTTTACGCAAGAAATACCTTGATGTTAGCAAGCGGAAAACTATGAGTAGAAGGCCAAAGGAATGA 2202 0.4768 MVGPILRSLWSSTRKSFTRSSPPLLHSRFFSRAFAAAPAVDPAATTSASSIDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPYERAMDSISLERERGITIASKVTSVTWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPVLLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAETKNMSQLLDAVVTHVPAPNANTDAPFQMLDCEVLIQWTDLPKCDATWEPVETIMKHISSHLEDKVALVWWGRGALLGQLLVGTSVTASKQNKKIGGRGLNSAFQVSMMEPDFYLGRILTGRISSGVVRVGDRVHGLRNKDSGAEKIEDGKVLKLMKKKGINMVLTDYAGAGDIISIAGLSSPSIGHTVATVEIMSALPTVELDPPTISMTFAVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGFELSVSPPKVMYKTESGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVPGTVGRTRLSLTCPSRGLVGYRRVFSSDTRGTGFMHRAFVLSMHMNNFEALLAMSGKEYWYVSVGFGTITAYALLTLEARGTLFVNPGMETYDGMIVGEHSRDTDLDVNPANAKKLNNIRTAFKDETVRLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVSKRKTMSRRPKE 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01310 733 SUPERFAMILY Chromo domain-like 263 293 IPR016197 -
Vimu5g01310 733 FunFam Elongation factor family protein 331 432 - -
Vimu5g01310 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 261 IPR027417 -
Vimu5g01310 733 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 54 252 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 FunFam GTP-binding protein TypA 511 601 - -
Vimu5g01310 733 CDD BipA_TypA_C 520 593 IPR035651 -
Vimu5g01310 733 Gene3D - 54 252 IPR027417 -
Vimu5g01310 733 FunFam GTP-binding protein TypA 55 252 - -
Vimu5g01310 733 PRINTS GTP-binding elongation factor signature 98 106 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 PRINTS GTP-binding elongation factor signature 134 145 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 PRINTS GTP-binding elongation factor signature 170 179 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 PRINTS GTP-binding elongation factor signature 58 71 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 PRINTS GTP-binding elongation factor signature 118 128 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 Gene3D Translation factors 332 432 - -
Vimu5g01310 733 Gene3D bipa protein 610 725 IPR042116 -
Vimu5g01310 733 Pfam Elongation factor Tu domain 2 348 421 IPR004161 GO:0005525
Vimu5g01310 733 Gene3D - 511 609 - -
Vimu5g01310 733 SUPERFAMILY Translation proteins 201 431 IPR009000 -
Vimu5g01310 733 NCBIfam small GTP-binding protein domain 57 196 IPR005225 GO:0005525
Vimu5g01310 733 Pfam Elongation factor Tu GTP binding domain 55 249 IPR000795 GO:0003924|GO:0005525
Vimu5g01310 733 CDD TypA_BipA 56 251 IPR047041 -
Vimu5g01310 733 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 91 106 IPR031157 -
Vimu5g01310 733 SUPERFAMILY EF-G C-terminal domain-like 520 639 IPR035647 -
Vimu5g01310 733 Gene3D Elongation Factor G (Translational Gtpase), domain 3 439 717 - -
Vimu5g01310 733 FunFam GTP-binding protein TypA 613 696 - -
Vimu5g01310 733 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 239 725 - -
Vimu5g01310 733 Pfam Elongation factor G C-terminus 518 593 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01310 Vimu-Chr5 23168604 23188887 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01310 55 179 Eukaryotic Initiation Factors Gene Family AT3G22980 41.985 1.45e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01310 K06207 - pda:103713217 906.746