Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01307 ATGGTGGGTCCCATTCTTCGTTCTCTCTGGTCTTCTACCAGAAAATCCTTCACCCCTTCTTCCCCTCCTTTATCGTACTCGCGCTTCTTCTCACGCGCCTTCGCTGCCGCTCCCGCCGTCGACCCCGCCGCCACAACCAGCGCCTCCTCCATCGACCCCAGCCGCCTCCGCAACGTGGCCGTGATCGCCCATGTAGACCACGGCAAGACAACACTTATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGACTCCATCTCGCTGGAGCGCGAGCGCGGCATCACCATTGCCTCTAAGGTTACGTCTGTTACGTGGAAGGAGAACGAGCTGAACATGGTTGATACTCCCGGGCACGCTGATTTTGGTGGAGAGGTTGAGCGTGTTGTTGGGATGGTGGAGGGAGCAATTTTAGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAGTTTGTTCTGGCAAAGGCCTTGAAGTATGGGTTGCGACCTATTCTTCTTTTAAACAAAGTAGACCGTCCTTCAGTTACTGAAGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAACAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCCACCACGTTTACCAAGGATCCTCCTGCAGAGACCAAAAATATGTCACAGTTGCTTGATGCAGTTGTAACACATGTCCCAGCACCAAATGCAAACACTGATGCGCCTTTCCAAATGTTGGACTGCAAAGTTCTTATTCAATGGGCTGACCTGCCAAAATGTGATGCCACATGGGAACCAGTAGAAACCATCACGAAGCATATTTCTTCTTACCTTGAGGACAAGGTGGCTCTTGTTTGGAGGGGACGGGGGGCATTGTTAGGCCAAGTTTCAATGATGGAACGTGATTTCTATCTTGGGCGGATTTTGACTGGACGCATATCATCTGGGGTTGTTCGTGTTGGTGACCGGGTTCATGGGCTACGGAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATATCAATTGCTGGCCTGTCCAGTCCATCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCAACAGTTGAATTGGACCCTCCAACAATTTCTATGACTTTCGGTGTGAATGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTGACTGGGGGGAAAATTGGTGATCGACTAATGGCTGAAGCTGAAACCAACCTTGCCATTAATGTGCTTCCTGGCTTATCAGAATCGTTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTAGGTATTTTGATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAGAGTCATGTATAAAACTGAAAGTGGTCAAAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTATCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCCCTGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGTCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGGGCTTTCTATGCATATGAACAATTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTGTCCATGGGTTTTGGTACTATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAAATCCTGGAATGGAGACGTATGATGGAATGATTGTTGGAGAGCATTCACGGGATACAGATCTTGATGTGAATCCAGTGAGGGCCAAAGAACTTACAAATGTCCGTGCTGCTTCCAAAGATGAGAATGTTAAGCTAACTCCCCCTCGCCTGATGACACTTGAAGAAGCTATAGGTTATGTAGCTTCCGATGAGCTTATTGAGGTTACACCAAAAGCCATTCGTTTACGCAAGAAATACCTTGATGTTAGCAAGCGGAAAACTATGAGTAGAAGGCCAAAGGAATGA 2142 0.4804 MVGPILRSLWSSTRKSFTPSSPPLSYSRFFSRAFAAAPAVDPAATTSASSIDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVTWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAETKNMSQLLDAVVTHVPAPNANTDAPFQMLDCKVLIQWADLPKCDATWEPVETITKHISSYLEDKVALVWRGRGALLGQVSMMERDFYLGRILTGRISSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPSIGHTVATVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPRVMYKTESGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVPGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFYAYEQFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVNPGMETYDGMIVGEHSRDTDLDVNPVRAKELTNVRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVSKRKTMSRRPKE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01307 713 FunFam GTP-binding protein TypA 55 252 - -
Vimu5g01307 713 Pfam Elongation factor G C-terminus 502 585 IPR000640 -
Vimu5g01307 713 SUPERFAMILY Translation proteins 201 405 IPR009000 -
Vimu5g01307 713 CDD BipA_TypA_C 504 584 IPR035651 -
Vimu5g01307 713 PRINTS GTP-binding elongation factor signature 98 106 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 PRINTS GTP-binding elongation factor signature 134 145 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 PRINTS GTP-binding elongation factor signature 118 128 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 PRINTS GTP-binding elongation factor signature 58 71 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 PRINTS GTP-binding elongation factor signature 170 179 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 SUPERFAMILY EF-G C-terminal domain-like 504 620 IPR035647 -
Vimu5g01307 713 FunFam GTP-binding protein TypA 590 676 - -
Vimu5g01307 713 CDD TypA_BipA 56 251 IPR047041 -
Vimu5g01307 713 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 91 106 IPR031157 -
Vimu5g01307 713 FunFam Elongation factor family protein 307 406 - -
Vimu5g01307 713 Pfam Elongation factor Tu GTP binding domain 55 249 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 FunFam GTP-binding protein TypA 413 521 - -
Vimu5g01307 713 SUPERFAMILY EF-G C-terminal domain-like 410 493 IPR035647 -
Vimu5g01307 713 Gene3D bipa protein 590 705 IPR042116 -
Vimu5g01307 713 Gene3D - 54 252 IPR027417 -
Vimu5g01307 713 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 52 226 - -
Vimu5g01307 713 Gene3D Translation factors 305 406 - -
Vimu5g01307 713 Pfam Elongation factor Tu domain 2 322 395 IPR004161 GO:0005525
Vimu5g01307 713 NCBIfam small GTP-binding protein domain 57 196 IPR005225 GO:0005525
Vimu5g01307 713 Gene3D - 495 589 - -
Vimu5g01307 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 261 IPR027417 -
Vimu5g01307 713 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 54 252 IPR000795 GO:0003924|GO:0005525
Vimu5g01307 713 CDD BipA_TypA_II 311 405 IPR047042 -
Vimu5g01307 713 CDD BipA_III 412 489 IPR047043 -
Vimu5g01307 713 Gene3D Elongation Factor G (Translational Gtpase), domain 3 413 697 - -
Vimu5g01307 713 FunFam GTP-binding protein TypA 495 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01307 Vimu-Chr5 23125043 23141031 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01307 55 179 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 2.70e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01307 K06207 - gmx:100789218 1180.62