Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu5g01307 | ATGGTGGGTCCCATTCTTCGTTCTCTCTGGTCTTCTACCAGAAAATCCTTCACCCCTTCTTCCCCTCCTTTATCGTACTCGCGCTTCTTCTCACGCGCCTTCGCTGCCGCTCCCGCCGTCGACCCCGCCGCCACAACCAGCGCCTCCTCCATCGACCCCAGCCGCCTCCGCAACGTGGCCGTGATCGCCCATGTAGACCACGGCAAGACAACACTTATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGACTCCATCTCGCTGGAGCGCGAGCGCGGCATCACCATTGCCTCTAAGGTTACGTCTGTTACGTGGAAGGAGAACGAGCTGAACATGGTTGATACTCCCGGGCACGCTGATTTTGGTGGAGAGGTTGAGCGTGTTGTTGGGATGGTGGAGGGAGCAATTTTAGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAGTTTGTTCTGGCAAAGGCCTTGAAGTATGGGTTGCGACCTATTCTTCTTTTAAACAAAGTAGACCGTCCTTCAGTTACTGAAGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAACAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCCACCACGTTTACCAAGGATCCTCCTGCAGAGACCAAAAATATGTCACAGTTGCTTGATGCAGTTGTAACACATGTCCCAGCACCAAATGCAAACACTGATGCGCCTTTCCAAATGTTGGACTGCAAAGTTCTTATTCAATGGGCTGACCTGCCAAAATGTGATGCCACATGGGAACCAGTAGAAACCATCACGAAGCATATTTCTTCTTACCTTGAGGACAAGGTGGCTCTTGTTTGGAGGGGACGGGGGGCATTGTTAGGCCAAGTTTCAATGATGGAACGTGATTTCTATCTTGGGCGGATTTTGACTGGACGCATATCATCTGGGGTTGTTCGTGTTGGTGACCGGGTTCATGGGCTACGGAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATATCAATTGCTGGCCTGTCCAGTCCATCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCAACAGTTGAATTGGACCCTCCAACAATTTCTATGACTTTCGGTGTGAATGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTGACTGGGGGGAAAATTGGTGATCGACTAATGGCTGAAGCTGAAACCAACCTTGCCATTAATGTGCTTCCTGGCTTATCAGAATCGTTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTAGGTATTTTGATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAGAGTCATGTATAAAACTGAAAGTGGTCAAAAGCTTGAGCCCGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTATCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCCCTGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGTCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGGGCTTTCTATGCATATGAACAATTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTGTCCATGGGTTTTGGTACTATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAAATCCTGGAATGGAGACGTATGATGGAATGATTGTTGGAGAGCATTCACGGGATACAGATCTTGATGTGAATCCAGTGAGGGCCAAAGAACTTACAAATGTCCGTGCTGCTTCCAAAGATGAGAATGTTAAGCTAACTCCCCCTCGCCTGATGACACTTGAAGAAGCTATAGGTTATGTAGCTTCCGATGAGCTTATTGAGGTTACACCAAAAGCCATTCGTTTACGCAAGAAATACCTTGATGTTAGCAAGCGGAAAACTATGAGTAGAAGGCCAAAGGAATGA | 2142 | 0.4804 | MVGPILRSLWSSTRKSFTPSSPPLSYSRFFSRAFAAAPAVDPAATTSASSIDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVTWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAETKNMSQLLDAVVTHVPAPNANTDAPFQMLDCKVLIQWADLPKCDATWEPVETITKHISSYLEDKVALVWRGRGALLGQVSMMERDFYLGRILTGRISSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPSIGHTVATVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPRVMYKTESGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVPGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFYAYEQFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVNPGMETYDGMIVGEHSRDTDLDVNPVRAKELTNVRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVSKRKTMSRRPKE | 713 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu5g01307 | 713 | FunFam | GTP-binding protein TypA | 55 | 252 | - | - | |
Vimu5g01307 | 713 | Pfam | Elongation factor G C-terminus | 502 | 585 | IPR000640 | - | |
Vimu5g01307 | 713 | SUPERFAMILY | Translation proteins | 201 | 405 | IPR009000 | - | |
Vimu5g01307 | 713 | CDD | BipA_TypA_C | 504 | 584 | IPR035651 | - | |
Vimu5g01307 | 713 | PRINTS | GTP-binding elongation factor signature | 98 | 106 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | PRINTS | GTP-binding elongation factor signature | 134 | 145 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | PRINTS | GTP-binding elongation factor signature | 118 | 128 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | PRINTS | GTP-binding elongation factor signature | 58 | 71 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | PRINTS | GTP-binding elongation factor signature | 170 | 179 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | SUPERFAMILY | EF-G C-terminal domain-like | 504 | 620 | IPR035647 | - | |
Vimu5g01307 | 713 | FunFam | GTP-binding protein TypA | 590 | 676 | - | - | |
Vimu5g01307 | 713 | CDD | TypA_BipA | 56 | 251 | IPR047041 | - | |
Vimu5g01307 | 713 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 91 | 106 | IPR031157 | - | |
Vimu5g01307 | 713 | FunFam | Elongation factor family protein | 307 | 406 | - | - | |
Vimu5g01307 | 713 | Pfam | Elongation factor Tu GTP binding domain | 55 | 249 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | FunFam | GTP-binding protein TypA | 413 | 521 | - | - | |
Vimu5g01307 | 713 | SUPERFAMILY | EF-G C-terminal domain-like | 410 | 493 | IPR035647 | - | |
Vimu5g01307 | 713 | Gene3D | bipa protein | 590 | 705 | IPR042116 | - | |
Vimu5g01307 | 713 | Gene3D | - | 54 | 252 | IPR027417 | - | |
Vimu5g01307 | 713 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 52 | 226 | - | - | |
Vimu5g01307 | 713 | Gene3D | Translation factors | 305 | 406 | - | - | |
Vimu5g01307 | 713 | Pfam | Elongation factor Tu domain 2 | 322 | 395 | IPR004161 | GO:0005525 | |
Vimu5g01307 | 713 | NCBIfam | small GTP-binding protein domain | 57 | 196 | IPR005225 | GO:0005525 | |
Vimu5g01307 | 713 | Gene3D | - | 495 | 589 | - | - | |
Vimu5g01307 | 713 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 50 | 261 | IPR027417 | - | |
Vimu5g01307 | 713 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 54 | 252 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu5g01307 | 713 | CDD | BipA_TypA_II | 311 | 405 | IPR047042 | - | |
Vimu5g01307 | 713 | CDD | BipA_III | 412 | 489 | IPR047043 | - | |
Vimu5g01307 | 713 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 413 | 697 | - | - | |
Vimu5g01307 | 713 | FunFam | GTP-binding protein TypA | 495 | 589 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu5g01307 | Vimu-Chr5 | 23125043 | 23141031 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu5g01307 | 55 | 179 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 42.748 | 2.70e-25 | 110 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu5g01307 | K06207 | - | gmx:100789218 | 1180.62 |