Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01305 ATGCAAAGAAATAGCAGTGGAATGCATCCTGCATGTGCAGCATGCAAGCACCAAAGGAAGAAATGCAGTGAAAACTGCATATTGGCACCTTATTTTCCATCAAACAGAAGCCGTGAGTTTCATGCTGTGCACAAGGTTTTTGGGGTGAGCAACATAACAAAGTTGGTAAAGAATGCTAGAGAGGATGATAGAAGAAGAGTGGTGGATTCATTGACATGGGAAGCATGTTGCAGACAAAGAGACCCTATTCATGGCCCTTATGGAGAGTACACAAAGGTTTTCAATGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAGATGTTGCAGTTTCCCTCTCTAGGGTTCAAGTCTCTGCAAGAGAAAGCAGAAGAAGTTTCAGATATTTACAAAAAGAATGCTATTATTGATTCTGATATTTACAACACTTATTGTTCCAGTTATTTGCAAGAGTTTCAGAATCTCAGGCCTGAAGTTCTCATACCCTTTCAGCATCATTCTCAACCATACTACATTACAGGTATTCTTTAG 546 0.3993 MQRNSSGMHPACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVFNEYKKVLDELKRFRSQHQMLQFPSLGFKSLQEKAEEVSDIYKKNAIIDSDIYNTYCSSYLQEFQNLRPEVLIPFQHHSQPYYITGIL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01305 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vimu5g01305 181 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Vimu5g01305 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01305 Vimu-Chr5 23079482 23080027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01305 9 109 AS2 family AT1G06280 56.436 2.05e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu5g01305 LOB 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01305 - - vra:106780610 356.681