Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01302 TTGGTGTCACTCAAAATGGCTCAATTGCCACCAAAAGTTCCAAACATGACACCCAATTGGCCAGACTTTTCTTCTCCACACCAAAAGATGCCTTCCTTCAAAACCATGGCACCAAACATCTCAAACCAAAACCCTTCATGGGTGGATGAGTTTCTTGACTTCTCAGCCGCCAGACGCGGTGCTCACCGGCGCTCCGTGAGTGACTCCGTCGCCTTCCTGGAGGCACCAATGCTGGATCATCACTGTAAAAGCCGCGGGAGTGATGGTGGTGGTGACAATGAGAACGAGTTCGAGAGGTTTGATGACGAACAATTCATGTCCATGTTCAGTGATGAGGCTTCAGGGAATAATAATAGTAATAATATTATTGATAATGATAATAATAATAATAATAATATCAACAACTACCATAGTAATAATAACACCATGATGGCATTCACGGTTTCCTGCTCCAACCCTTCTACACCCTCTGATCACAACAGCATCAACGATGAGAAGGATATGAACAAGGAAAAGGAGGAGGAGCAAGAGACGAAGCAAGTGAAGAATGAGTCAGATGAGGATGAAAGCCAATGCAAGCAAGAAATCACACAAAACCCCGATGATTGTAATAATAGTAACGCAAATGCAGCAACTTGTTCCAGTGAGAAAATCACAGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCGGCACAGAGATCAAGAGTGAGGAAGCTGCAATACATTTCTGAGCTTGAACGAAGTGTGACTTCATTACAGGCTGAAGTTTCTGTATTGTCTCCGCGAGTTGCATTTTTGGATCATCAACGTTTGCTTCTGAATGTTGACAACAGTGCTTTGAAGCAAAGAATCGCCGCGCTGGCCCAAGACAAGATCTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAAAACATAAAGAAGATGGATAATGCTGCAGGATCAACATCCCAATCACCATTACCATCTCCAAAACCACGATGTGACACACTCACTGAAAAGGAACAACTTATCAATGTCTGA 1065 0.4347 MVSLKMAQLPPKVPNMTPNWPDFSSPHQKMPSFKTMAPNISNQNPSWVDEFLDFSAARRGAHRRSVSDSVAFLEAPMLDHHCKSRGSDGGGDNENEFERFDDEQFMSMFSDEASGNNNSNNIIDNDNNNNNNINNYHSNNNTMMAFTVSCSNPSTPSDHNSINDEKDMNKEKEEEQETKQVKNESDEDESQCKQEITQNPDDCNNSNANAATCSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMDNAAGSTSQSPLPSPKPRCDTLTEKEQLINV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01302 354 Coils Coil 169 191 - -
Vimu5g01302 354 MobiDBLite consensus disorder prediction 160 195 - -
Vimu5g01302 354 MobiDBLite consensus disorder prediction 110 159 - -
Vimu5g01302 354 SUPERFAMILY Leucine zipper domain 222 276 IPR046347 GO:0003700|GO:0006355
Vimu5g01302 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700|GO:0006355
Vimu5g01302 354 FunFam Basic leucine zipper 61 221 294 - -
Vimu5g01302 354 MobiDBLite consensus disorder prediction 110 215 - -
Vimu5g01302 354 Pfam bZIP transcription factor 222 266 IPR004827 GO:0003700|GO:0006355
Vimu5g01302 354 PANTHER BASIC LEUCINE ZIPPER 34 6 339 - -
Vimu5g01302 354 Gene3D - 221 292 - -
Vimu5g01302 354 MobiDBLite consensus disorder prediction 196 215 - -
Vimu5g01302 354 SMART brlzneu 218 282 IPR004827 GO:0003700|GO:0006355
Vimu5g01302 354 CDD bZIP_plant_RF2 223 273 IPR044759 GO:0003700|GO:0006355
Vimu5g01302 354 Coils Coil 301 321 - -
Vimu5g01302 354 MobiDBLite consensus disorder prediction 321 354 - -
Vimu5g01302 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 272 IPR004827 GO:0003700|GO:0006355
Vimu5g01302 354 MobiDBLite consensus disorder prediction 321 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01302 Vimu-Chr5 23047289 23049568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01302 6 299 bZIP Transcription Factor Family AT3G58120 57.643 2.00e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g01302 bZIP_1 3.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01302 - - gmx:778128 494.967