Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01298 ATGCATAACATACGAAACAAAGTTTCATTCTTCACTCAGTTCTTTTCTTCCATCACACAGATACTCTTTCTCTCTTTTCTTCTTTCTCTTTCTCTCTCACCCGAAACCATGGATATCTTCCGCAATGATCAAGAACACGACCTCCCATATGTTCCAAACACTGACGATTCAGACAACAACACCACCAACGAAAACAAAAAGATACTCTACATATCTATGGTTTCCTTCACGGTTGTCTTGTTCCTCGTCTTCTCCCTCTACGTCTACGCGCGCTGCATGCTCACGCGCCGATCTCGTCACCGTGCCTCCGTTCGCCGACTCAACCTTGCAGCCCTTCATGTCTCCGACATGGACGCTGCAAACCGCAGGATCGAACCAGCAAATACAGGACTCGATCCTGGTATAGTAGCGTCGCTGCCAACGTTCACCGTGAAGGCAAAGGTTTTAAGAGGTGGTAGTGGTGATAATAATAACAGTGGCGGTGGTGGTGATGCTTCATCGGTAATGGAGTGTGTTGTGTGCTTGAATGCTCTGGAAGGTGAAGAAAAAGTGAAGCTGCTACCGAACTGTAACCACTTTTTTCATGTGAGTTGTATTGACATGTGGCTTGGTTCTCACTCTACGTGCCCTCTTTGTCGGGCCGAGGTTAAACCTCGGATCCAACCACATGATCGTGAAGGTCCTGTTAGTCTTGCTCTTGATGATGCACCACCTCCTATGATTGATGATGGTGTTGGTAATGGTGAATCTTTCAAAGGTAATGGTTCGAATTCACGGTTGAGCTCTTTTAGAAGGATGCTTAGCAGGGAAAGATCTTCCAGAAGAGTCCAACCGAATGGCCATGATGAGGAAGGTGGTGTTGATCATGATTTGGAGAGACAATGA 885 0.4644 MHNIRNKVSFFTQFFSSITQILFLSFLLSLSLSPETMDIFRNDQEHDLPYVPNTDDSDNNTTNENKKILYISMVSFTVVLFLVFSLYVYARCMLTRRSRHRASVRRLNLAALHVSDMDAANRRIEPANTGLDPGIVASLPTFTVKAKVLRGGSGDNNNSGGGGDASSVMECVVCLNALEGEEKVKLLPNCNHFFHVSCIDMWLGSHSTCPLCRAEVKPRIQPHDREGPVSLALDDAPPPMIDDGVGNGESFKGNGSNSRLSSFRRMLSRERSSRRVQPNGHDEEGGVDHDLERQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01298 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 220 IPR013083 -
Vimu5g01298 294 SUPERFAMILY RING/U-box 170 220 - -
Vimu5g01298 294 MobiDBLite consensus disorder prediction 264 294 - -
Vimu5g01298 294 SMART ring_2 171 212 IPR001841 -
Vimu5g01298 294 MobiDBLite consensus disorder prediction 222 294 - -
Vimu5g01298 294 PANTHER RING-H2 FINGER PROTEIN ATL16 56 218 IPR044600 GO:0016567|GO:0016740
Vimu5g01298 294 CDD RING-H2_EL5-like 170 213 - -
Vimu5g01298 294 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Vimu5g01298 294 Pfam Ring finger domain 170 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01298 Vimu-Chr5 23016719 23020590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01298 60 294 C3H Transcription Factor Family AT2G42360 38.017 1.86e-43 147