Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01297 ATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCACTGGTAGAAAAGATCGCCACAGCAAGGTCTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCCGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTACTCATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCATGGCAGTTGAACAACAACAAGAAGAACCTCATCAACAACAGTCAGAGTCGTGTGGCTACAACTTTCAGCTCCATAGGCAACTGGGGGCCTTTATTTCTACTCATGTTGACACTGACCCCATCAATTTTCAAACCACCAACAACTCAGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATCAATTGGCCATCACAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAGCACCAAATTCAAAACCTTTTTGCTGGTTCAACCCCAGTTTCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGGTCATGTGAGCAGAATGGGATTCTTTCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCGGCTTATGCTCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCAATGACATCCTCTGAGCATCAGAGGCCCCAGCCAGTTCACCAACCTTCCCTCTTTGGCACCAGGTTTGCTGTCTCTGATGGATTAGCCGGGTTCTGTATTCCAGATAGAATTCAAGGTGTGGAAGAGAACCATGGAGTTGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCAACTGA 945 0.4677 MRSSVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPPTHEEKQNDAAGSSGIMAVEQQQEEPHQQQSESCGYNFQLHRQLGAFISTHVDTDPINFQTTNNSEDLGLSLHCFQDHPGLINWPSQQGANQAPPSNEHQIQNLFAGSTPVSFENHYQRTVTWNNEATTGGHVSRMGFFLNSQPFIGQGSASAYAQSETLQSSFSFPMTSSEHQRPQPVHQPSLFGTRFAVSDGLAGFCIPDRIQGVEENHGVASNRPSSSPSSIN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01297 314 MobiDBLite consensus disorder prediction 18 37 - -
Vimu5g01297 314 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 272 IPR005333 GO:0003700
Vimu5g01297 314 MobiDBLite consensus disorder prediction 81 101 - -
Vimu5g01297 314 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Vimu5g01297 314 Pfam TCP family transcription factor 21 117 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01297 Vimu-Chr5 22982076 22986494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01297 5 311 TCP Transcription Factor Family AT1G53230 35.884 1.95e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu5g01297 TCP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01297 - - vum:124834546 607.06