Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01282 ATGGAAATGGAGGAATTTTTATGGGGTGGTGACATTGATGGGGATGTTCCTAAGGGGAACAGTGATGGTTTTGAAGGAAGCAGTGGAATGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCTCCTGTGAAATTGGAAAGAAAAGGGGTGTCCACTGAGAGAAGCACTGAAGCTTTGAAGAACCATAGCGAGGCAGAGAGGAGAAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAGGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTCGAGCATCACTGTGTTGTGAATATAAACCAGGCCTGTTGTCTGATATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGGGCGGATATTGCAACCTTAGAAGGCAGAATGAAGAATGTTTTTGTGATCATTAGCTGCAAAGAACACAACTTTGAAGATGCTTCATACCGTCAGTTTCTGGCTGGTTCTATTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAAGACATTTTAGGAACTAGGAAAAGAAGAAGAATTTCTATATTCAGTTCTTCATCTTTGGAAGATTTCTTGTAA 777 0.4131 MEMEEFLWGGDIDGDVPKGNSDGFEGSSGMIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERSTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEHNFEDASYRQFLAGSIHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01282 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Vimu5g01282 258 CDD ACT_UUR-ACR-like 157 228 - -
Vimu5g01282 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Vimu5g01282 258 PANTHER TRANSCRIPTION FACTOR BHLH30 42 250 IPR045847 GO:0003700|GO:0006355
Vimu5g01282 258 SMART finulus 75 124 IPR011598 GO:0046983
Vimu5g01282 258 Gene3D - 63 126 IPR036638 GO:0046983
Vimu5g01282 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01282 Vimu-Chr5 22793144 22794361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01282 23 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.667 6.01e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g01282 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01282 - - gmx:100788819 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01282 5 22793144 22794361 Vimu5g01282 5 22793144 22794361 ECH