Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01257 ATGGGTTTTCGTTTACATGGTATCCGAAAGGCGTTGTTCGCAGCAAACCAAGCATCTTCAAAAGCAGGGGATATGCCAAAGGGTTATCTTGCAGTCTACGTGGGAGAGAAAATGAAGCGGTTTTTAATTCCCGTATCATACTTGAATCAACCTTCATTTCAGGACTTGTTGAATCAAGCTGCGGAAGAATTTGGATATGATCATCCCATTGGTGGCCTCACAATTCCTTGCAGTGAAGATGTCTTCCGAACTAGCCAGGAAGCTTCAAAATCTGTAGAAGTCCCAAAGGGCTACCTTGCAGTGTATGTTGGAGAGAAACAAAAGCGGTTTGTGATTCCCATATCATACTTGAACCAATCTTCATTTCAAGGCTTGTTGAGTCAAGTTGAAGCAGAGTTTGGATACAATCATCCCATGGGTGGCCTTACAATTCCTTGCAGTGAAGATGTCTTCCAACGTATAGTTTCTTGCTTGAATTGA 480 0.425 MGFRLHGIRKALFAANQASSKAGDMPKGYLAVYVGEKMKRFLIPVSYLNQPSFQDLLNQAAEEFGYDHPIGGLTIPCSEDVFRTSQEASKSVEVPKGYLAVYVGEKQKRFVIPISYLNQSSFQGLLSQVEAEFGYNHPMGGLTIPCSEDVFQRIVSCLN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01257 159 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 88 157 IPR003676 GO:0009733
Vimu5g01257 159 Pfam Auxin responsive protein 16 84 IPR003676 GO:0009733
Vimu5g01257 159 Pfam Auxin responsive protein 88 158 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01257 Vimu-Chr5 22610844 22614944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01257 17 83 Calmodulin-binding Proteins AT3G43120 49.254 6.31e-18 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01257 5 22610844 22614944 Vimu5g01257 5 22610844 22614944 ECH