Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01253 ATGAGGCTACCAAGTTCAACCATCCAGCTTCTCTGCCAAATTCTTCTTGTTTGTCTACTGAACAGACCCAGCTTTGCAGTGAAAAAGTCATATGTGGTGTACTTGGGAGCTCACTCACACGGCCCAGAATTATCTTCATCTTTCGTTGACTTCAATCAAGTGACACAGTCCCACTATGAGTTTCTGGGATCTTACTTAAGAAGTCCTAATACAGCCAAGGACTCCATCTTTTACTCATACACAAGACACATCAATGGTTTTGCTGCAACTTTGGAAGAAGAAGTAGCTGCCGAGATAGCAAAGCACCCCAAAGTGTTATCAGTGTTTGAGAACAGAGGAAGAAAGCTACACACCACTCGATCATGGGAATTCATGGGGCTAGAGCATAAAGGCTTGATCCCATCTGACTCAATATGGAAGAAAGCCAGATTTGGTGAAGGAGTCATAATTGGAAACCTGGATACAGTGGGCCCACTCAACTCTTCCTTTCAATCGCCACGTGACAAGGAGGGCCATGGCTCCCATACCCTCTCCACAGCCGCCGGCAACGCCGTTCCTGGAGTTAGCGTCTTCGGCCAGGGCTTCGGAACCGCCAAGGGCGGCGCGCCCAAAGCCCGCGTGGCGGCGTACAAGGTCTGCTGGCCCCCCGTTGCCGATGATGAGTGCTTCGATGCTGATATCTTGGCCGCGTTTGACGAGGCCATCCACGACGGTGTGGACGTGCTGTCAGTGTCGCTCGGTGGGTCCGCCTCAAGCTTGCTGAATGACAGCGTAGCGATTGGATCATTCCATGCCGCAAATCGAGGAATCGTGGTGGTTTGCTCCGCGGGGAATAGTGGGCCTGCCGATGCCAGTGTGAGCAATCTTGCACCCTGGCATGTTACGGTTGCCGCCAGCACCATGGATAGAGAATTCCCAGCTTATGTTGTCCTCGGTGACAATATCACGTTGAAGGACCCAGGTAAAACCATTTTAACTTTTGACTCTGCTGCTGCAACAGATTCAACAACACATCACAAGATTGGTTTAGTTGACCTCCACGCTGGTCAGTATGTCCTTCATGGCCCTACCCTCAATGGTGCATCTTGCGTGCATTCTTTCCAGTTCACAATAGCCACTCATTGCTGCCAACAACAACATTTGGCACAATCGCTTAGGTCAATAATGTTTTTGCTTGATTTGAAGGGTGAAAGCTTATCAGCTGCAAGATTGGCACACAAGTTGTACCCAATTATTAAAGCTACAGATGCTAAATTGGACAGTGCAAGAACAGAAGATGCGTTGCTGTGCCAGAATGGGACCTTGGATCCCAACAAGGTGAAGGGAAAGATCGTGATATGTCTCCGAGGGATAAATGCGAGAGTGGACAAAGGAGAGCAAGCTTTACTAGCTGGTGCTGTGGGAATGGTCCTTGCTAATAACAAGGCCAGTGGCAATGAAATTATAGCTGATCCTCATCCTGATGTCACCGCACCGGGAGTGTCAGTTATAGCAGCCTATACTAAAGCCCAAGGACCAACCAATCAAGTGTTTGATAAGCGCCGGATTTCGTATAATTCAGTCTCAGGAACATCAATGTCGTGCCCTCATGTTTCAGGCATTGCGGCACTGTTGAGAGCCTCGTATCCTTCCTGGACTACGAACAAGCTGAGAATTTGTCCTCCGCTACTTTCAGCCACAACACTTGATAATGAAGTGGAGCCTCTGCTGAATGCTACTGATGGCATGGCAACACCATTGAGTTACGGGGCAGGACATGTACAACCAAACATAGCAATGGATCCCGGGTTAGTTTATGACACAACAATTGGTGATTACCTAAACTTCTTATGTGCTTTAGGATACAACGGGACACAAATCTCAGTGTTCACAGAAGGTTCATCATATGTGTGCCGCAAGAAATTTAGTCTCCTCAACCTGAACTATCCCTCAATCACAGTTCCAAATCTCTCTGGGTCAGTTACAGTTACGAGGACGTTGAAAAATGTTGGTTCTCCGAGCACGTACATTGCTCACGTTCATAACCCGAATGGGATCACTGTTTCTGTGAAGCCAAGCATCTTGAAGTTCACAAATGTTGGTGAAGAAAAACGCTTTAAAGTAACCTTTAAGATCGTGAAAGGAAAGGCTACGAATAACTACGTGTTTGGAAAACTGATATGGTCAGATGGCAGACATTATGTCAGAAGTCCAATAGTTGTGAAGGCCCTCACGAGTAGAAATTGA 2226 0.4753 MRLPSSTIQLLCQILLVCLLNRPSFAVKKSYVVYLGAHSHGPELSSSFVDFNQVTQSHYEFLGSYLRSPNTAKDSIFYSYTRHINGFAATLEEEVAAEIAKHPKVLSVFENRGRKLHTTRSWEFMGLEHKGLIPSDSIWKKARFGEGVIIGNLDTVGPLNSSFQSPRDKEGHGSHTLSTAAGNAVPGVSVFGQGFGTAKGGAPKARVAAYKVCWPPVADDECFDADILAAFDEAIHDGVDVLSVSLGGSASSLLNDSVAIGSFHAANRGIVVVCSAGNSGPADASVSNLAPWHVTVAASTMDREFPAYVVLGDNITLKDPGKTILTFDSAAATDSTTHHKIGLVDLHAGQYVLHGPTLNGASCVHSFQFTIATHCCQQQHLAQSLRSIMFLLDLKGESLSAARLAHKLYPIIKATDAKLDSARTEDALLCQNGTLDPNKVKGKIVICLRGINARVDKGEQALLAGAVGMVLANNKASGNEIIADPHPDVTAPGVSVIAAYTKAQGPTNQVFDKRRISYNSVSGTSMSCPHVSGIAALLRASYPSWTTNKLRICPPLLSATTLDNEVEPLLNATDGMATPLSYGAGHVQPNIAMDPGLVYDTTIGDYLNFLCALGYNGTQISVFTEGSSYVCRKKFSLLNLNYPSITVPNLSGSVTVTRTLKNVGSPSTYIAHVHNPNGITVSVKPSILKFTNVGEEKRFKVTFKIVKGKATNNYVFGKLIWSDGRHYVRSPIVVKALTSRN 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01253 741 Gene3D - 610 737 - -
Vimu5g01253 741 PRINTS Subtilisin serine protease family (S8) signature 168 181 IPR015500 -
Vimu5g01253 741 PRINTS Subtilisin serine protease family (S8) signature 522 538 IPR015500 -
Vimu5g01253 741 Pfam PA domain 430 496 IPR003137 -
Vimu5g01253 741 ProSitePatterns Serine proteases, subtilase family, serine active site. 523 533 IPR023828 -
Vimu5g01253 741 Pfam Fibronectin type-III domain 639 734 IPR041469 -
Vimu5g01253 741 Gene3D Peptidase S8/S53 domain 486 606 IPR036852 GO:0004252|GO:0006508
Vimu5g01253 741 Gene3D Peptidase S8/S53 domain 161 301 IPR036852 GO:0004252|GO:0006508
Vimu5g01253 741 CDD PA_subtilisin_like 394 496 - -
Vimu5g01253 741 FunFam Subtilisin-like protease SBT5.3 20 117 - -
Vimu5g01253 741 Pfam Subtilase family 164 551 IPR000209 GO:0006508|GO:0008236
Vimu5g01253 741 FunFam Subtilisin-like protease SBT1.5 610 737 - -
Vimu5g01253 741 SUPERFAMILY Subtilisin-like 116 597 IPR036852 GO:0004252|GO:0006508
Vimu5g01253 741 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 70 163 IPR045051 -
Vimu5g01253 741 Gene3D - 302 330 - -
Vimu5g01253 741 Pfam Peptidase inhibitor I9 30 117 IPR010259 -
Vimu5g01253 741 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 117 IPR037045 -
Vimu5g01253 741 ProSiteProfiles Serine proteases, subtilase domain profile. 121 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01253 Vimu-Chr5 22535111 22551164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01253 30 735 Subtilisin-like Serine Gene Family AT2G04160 39.724 6.34e-172 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01253 - - cpap:110808738 688.337