Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01246 ATGATAAAGCCTCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCCATCCTTCTCAAAAACTACGATCGCCTCAACGTACGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCCTCAAACGCCCCATCCCCGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCAGGTCAAGAAGACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGTATTGGCCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGTGCAGGCAAGGAATACGTCTGCATCGCCCGCCTCCACTCCGCTGTTCCCGACGTCTCCAAGGTCGGACGCGCCCTCGAGACCCTCACTGGCGCCGTCTTCCAGCGCCCGCCCTTGATCTCTGCCGTCAAACGTCAACTCCGCATCCGGACCATCTACGAAAGTTTGAGAATGATATTGATGTTGGGGAGAGGTCGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGGATTGCTGA 576 0.599 MIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPIPEYLKYGVINLDKPANPSSHEVVAWIKRLLQVKKTGHSGTLDPKVTGNLIVCIGRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVGRALETLTGAVFQRPPLISAVKRQLRIRTIYESLRMILMLGRGRAYDHQGGGYCSWDC 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01246 191 Pfam TruB family pseudouridylate synthase (N terminal domain) 74 157 IPR002501 GO:0006396
Vimu5g01246 191 SMART DKCLD_2 12 70 IPR012960 -
Vimu5g01246 191 Pfam DKCLD (NUC011) domain 13 70 IPR012960 -
Vimu5g01246 191 Gene3D Pseudouridine synthase 58 169 - -
Vimu5g01246 191 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 166 IPR004802 GO:0006396
Vimu5g01246 191 Gene3D PUA domain 14 57 IPR036974 GO:0003723
Vimu5g01246 191 SUPERFAMILY Pseudouridine synthase 13 165 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01246 Vimu-Chr5 22181659 22182595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01246 1 166 NAC Transcription Factor Family AT3G57150 90.361 4.16e-108 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01246 K11131 - gmx:100780706 323.168