Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01242 ATGCCGCCTCCTCCCTCCATTTGCCTCCTCCTCTCTCCATTCACCTCCTCCTTTCTCCATTCGCTTCATCTCTCACATTGCTCCCTAACGCGTCGTCTCATCCAAAGGCAACCAAAAGAGGTCTTTCGCAATCATTGTGTATTGGTAAGCTCTCTTTCTCGTTTTGGAGCTGCTCACTCCGAATTCATCTCCACACTCATCTTTGTCTTCGCCGCCTCCGGTTCCACCATTGCCGTAAAAAACCTCGCCGTCGACCCGCCCATTGCTTTCCTCCCCGTCGCCATTGCCAACGCCTTGACCCTCTCCGCCGCCGTCTCCTTCGGCAGAAACATTTCCGGCGGCCACGTCAACCCCGCAGTCACCTTCCGGCTTTGTCAGCGGCAAAGTTACCTGGTTCCGCTGCATCATCTTCTGGTTCGCACAGATCCTCGGCTCCGTCATCGCCTGCTTGCTCCTAAAGTTCATCTCCGGCGGACAACTGAATTTGAGGATTTGCAAGACCATGTCAAATCATCCCATGAAGGAACTTTAACTCAAACTTTTGAGGAAGAGGGTTTCTTCAATGAGACACTCACTAGTCTTTCTCATGTTCATATAATAACTGATACTGAAACTGCTTCAAGAGGAAGTCAAGGAGATTCGAGTTTCCAAAGCTTAGCAGACAAATCCATAACTCGTTTTTATTTTGAATTTTCGGCTTCATGGCCACGTATACCAAGTTGGATCTCCTTTTTAGGAAGTGATACATTCTACTCAAGTTTTGCACGTATTTTTAAACGACTTGTACAAGAATGTGGCATGCCTGTTGTGTTGGCTCTTAAAGGTGCAGTAGATGAGTTTACAACTGCTAAGGAGAGGTCTAAACAATGTGTGGCTGCTGAAGCATTGGCGGGTGTGCTACATTCTGATATTGATGGTTTATCAGGAACATGGGAAAGTTGGCTGATGCCTCAGTTGAAGAATGTCATTTTAACCCAATCTGTTGAATCAGTTCCAGAGTGGGCATCTTGCATACGGTATGCAGTTACTGGTAAAGGGAAGTATGGAACAAGAGTTCCTCTTCTGAGACAAAAAATTCTGGATTCTTTGATGACATCTTTACCCCCAACAGTAGCTACCACTGTAAGAACCAAGCGAAATGCTTTTCTGGCAGCTGCACTTATAGAAATATCCCCACAGAAAATGCCTGTATCTGAAATTCAGCTCCACAATACACTTCTAAAGGAAGTTCTTGGAAATATGCACCACTCATCAGCCCAAGTAAATGTCCTCTCTGATCTCATATGTTCAATAAGTCATAAATTGAATATTTCCCTTCCTATACTACTTATCTGTTATCTCCCCTCCTATCAATTGCCAGCCAATTGGAGTCAGGAAATAAAACTACAAAACCATGGACTGACTATGCTTGATATACTAATGAACTATCTGAATGATTTTCGTAATCAAGAAAAGCATTAG 1461 0.4442 MPPPPSICLLLSPFTSSFLHSLHLSHCSLTRRLIQRQPKEVFRNHCVLVSSLSRFGAAHSEFISTLIFVFAASGSTIAVKNLAVDPPIAFLPVAIANALTLSAAVSFGRNISGGHVNPAVTFRLCQRQSYLVPLHHLLVRTDPRLRHRLLAPKVHLRRTTEFEDLQDHVKSSHEGTLTQTFEEEGFFNETLTSLSHVHIITDTETASRGSQGDSSFQSLADKSITRFYFEFSASWPRIPSWISFLGSDTFYSSFARIFKRLVQECGMPVVLALKGAVDEFTTAKERSKQCVAAEALAGVLHSDIDGLSGTWESWLMPQLKNVILTQSVESVPEWASCIRYAVTGKGKYGTRVPLLRQKILDSLMTSLPPTVATTVRTKRNAFLAAALIEISPQKMPVSEIQLHNTLLKEVLGNMHHSSAQVNVLSDLICSISHKLNISLPILLICYLPSYQLPANWSQEIKLQNHGLTMLDILMNYLNDFRNQEKH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01242 486 Gene3D Glycerol uptake facilitator protein. 44 138 IPR023271 -
Vimu5g01242 486 Pfam Major intrinsic protein 51 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01242 486 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01242 486 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01242 486 PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 166 421 IPR035309 GO:0016504|GO:0070577|GO:0070628
Vimu5g01242 486 SUPERFAMILY Aquaporin-like 57 126 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01242 Vimu-Chr5 22059284 22065595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01242 57 124 Major Intrinsic Protein MIP AT3G26520 56.338 1.67e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01242 K06699 - gmx:100781622 478.404