Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01239 ATGGAAGAGGGACGAGAAGATGCCATGCCAGCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGAATCTGTTTCCTTAAGCTCTCAACATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAGGGATTGAATTCAAATCCACCAGCGATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCGATCAAATGTAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCCTCTCACATGTTTGAGAATCATGGTGTCCAGATGCTAGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGCGTAGACTCATACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTATATGGAGTTTCAGATAGTGTTGAAAAAGAGGAAAATCTCCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCTGGCCTTCCCCTGCGAAACAGGATGTTACGATCATATTCCAGTCTAGAAAGAAATTTGAGTTTTTCACACAGTGAACCCAACATTGCAACTGCATTTGGTCGACGGAGTCGGAGAAAAGTCATTGCTGATCAAAGGACTGCTAGTTCAAGTCCAGAACATCCATCAGTGCGAGCACATGGACTGTCTAAGCTTAGTGGTGACAGAACTGCCTTTAGAGATTTTGCTGATGACCAGTCTACACCAAGGACTCGTGGCTATCAGAGTAGCCGTATGCCCTCACGTGAGCTTAAATACAGGCATACCATTCTCTCTGTCCACTTCTGGCAGTTGCATGTGGCAGCTTTTCTGCCACCCTTCCGATCCAGCTATAAATCAGATGGTGCTTCCTCATCAGAAGCTCGTAGAATACGAAGAAGAAGTATCAGCATGACACCAGAGATTGGCGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAGAACGTCTTCTGAGAGAGAAAGAGGCCGGTGATAGTTCATTGTCCCATTCACTAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATCTTGATGGTCATCAAGAGAGATCCCCCTTGTATTCACTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAAGCTTCTGAGAGAAGTGGAGTGTCAGAATATCCAATGAATGACGAACTGGAGTCTACTTGGAATAAAGTTCTTCAATCGCCAATGTTCAATGATGGACCTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCGCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGGGGCCTAATGCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCTAATTGTCTTGTGGACAAGCATTGGACAGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTAGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCTCCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAATGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTATTCTCTGTTTTGA 2565 0.4288 MEEGREDAMPAERRPSNMSWWPSDFVENFESVSLSSQHETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRSNVESPAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSVEKEENLQFHRRFEVSSNVSGLPLRNRMLRSYSSLERNLSFSHSEPNIATAFGRRSRRKVIADQRTASSSPEHPSVRAHGLSKLSGDRTAFRDFADDQSTPRTRGYQSSRMPSRELKYRHTILSVHFWQLHVAAFLPPFRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQERLLREKEAGDSSLSHSLNDRAGSMDLLKQKSNFNLDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQASERSGVSEYPMNDELESTWNKVLQSPMFNDGPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01239 854 Gene3D Transferase(Phosphotransferase) domain 1 677 853 - -
Vimu5g01239 854 Gene3D Phosphorylase Kinase; domain 1 591 676 - -
Vimu5g01239 854 CDD STKc_MAP3K-like 604 846 - -
Vimu5g01239 854 SMART serkin_6 598 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01239 854 Pfam Protein tyrosine and serine/threonine kinase 599 846 IPR001245 GO:0004672|GO:0006468
Vimu5g01239 854 ProSitePatterns Protein kinases ATP-binding region signature. 604 625 IPR017441 GO:0005524
Vimu5g01239 854 MobiDBLite consensus disorder prediction 535 550 - -
Vimu5g01239 854 MobiDBLite consensus disorder prediction 535 556 - -
Vimu5g01239 854 SUPERFAMILY Protein kinase-like (PK-like) 573 846 IPR011009 -
Vimu5g01239 854 MobiDBLite consensus disorder prediction 351 408 - -
Vimu5g01239 854 ProSiteProfiles Protein kinase domain profile. 598 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01239 854 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 352 846 - -
Vimu5g01239 854 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Vimu5g01239 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Vimu5g01239 854 FunFam Serine/threonine-protein kinase isoform 1 588 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01239 Vimu-Chr5 21998712 22008428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01239 1 853 MAP Kinase Kinase Kinase AT3G58640 65.774 0.0 1123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vimu5g01239 PK_Tyr_Ser-Thr 6.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01239 - - gmx:100807193 1476.07