Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01228 ATGGCTGCCTATGTGGCATCAGATCCACATTTCACGGATCTAAGCATTTTCCTTGCCAAAGCCGAGGGGAGAAGGTATAGGAGGGAGAGAGAAGAGGACCGAGCGGGAGAAGATGGGTACCAAACTGACCGAACGGTGAAAGAAAGGGGGCGAGCTGAAGAGGAGGACCGAGCGGTCCAAGCAGGAGAAGACGGGTTACGAGCTGACCGAACGGTGGGTAGCGGCAAGGAAGGCGAGAAAACTGTCGGATCCGATAGGGAGGAGGGAAAGGCTTGCCGGATAGTCAAAGGAGGAAACTGCCGGATAGTCAAGGGAGGAAACTGCCAGATAGTCAAAGGAGGAAACTATGGGATAGTCAAAGAGGAGAAAAAGTTGGAGAACTTGGAACTATCCATGAGGGGATTGGAGACGAAGATGGAGGCAGTATATAAGGGTTTGCAAGAACTGTTGAGGAAGATGAAAGAGAGAGCCCGACAATCAGAAGAAAATTCTGATGGAAGCCAGGCCTATGTCAACGGGAAGAAGGAGGACCAAGATCGTGGATGCCACGAGGAGCAACAAAATTGGAGAAAAGGGGTAGAGTTACCCATTTTTGACGGGGTTGATCCGTTGAATTGGGTCAGCAGAGCTGATAATTTTTTTGAACTACAAGGGATGTCAGAGGAAGAGAAGTTACGACTGGCCTACATCAGTATGGAGAAAAAGGCCAGATACTGGTTCAGATTTTGGAAGAGGAACGCCAAGAATCGTTCTTGGGAAGGTTTAAAGGAGGCGATGGTGATCCGATTCGTAGAAGGGAACATCGGGTCAGTTTTCGAAAGACTGGCAGCCAGTAAGCAATCGGGGATCAGGGAAGAATACGTCCAAGCTCCGAACGGGAAGGAACTGCCGGAACCGAACTGTATCGAACTGACGAATTCGAACGTGAGAGAACTACCAGAACCGGACGGTAGCAGACTGTTGGATCCGAATGTGAGAGAATGGGCGGAACCTAAAGAAAGAGGACCTACCGAGCCGAACAGGAGAGGACTACCAGAACCGGACGGTAGCAGACTATTGGATCCGAACGTGAGAGAATGGGCGGAACCTAAAGAAAGAGGACCTACCGAGCCGAACAGGAGAGGACGGCCAGAACCGACCGTGAGGAAACTGTTAGAACCGAACGGGCTAGTATTGGAAGGAAGAATGAAGGTTTTGGTAGGAAGGGCAGATGGAAAAATCAATGCCCTAGAGAGAACAAAGAATTCATTGAAGTGGTGGGCCATCGAAAAGAACAGGGGGCTCGTAGTTTTTGATACACCGGTAGAAGGAAGAGCACGACGTGAAGTCTTGAAAGACATTGAAGACCATTTCCTCAAGACTTATGGTTCTGGAAAAAGGGTGAACAGAATATTGGATGAAGAATGGAAGACATTGGAGGAGGTTTTACCACCACCCAAACCTACAGACCTGAATTGGAGGACAACAGACAGTGAGTACCGACCATATGATAACACGAGGATGAAGAGAAGCCAGGAGATCAAGTTTCACAGTTCCAGCCTTGAGGACAAGGTTGTTTTAAAGTGGATGAGAGGAGAAGGTATAGGAGGGAGAGAGAAGAGGACTGAGCGGGAGAAGATGGGTACCAAACTGACCGAGCGGAGGACCGAATGGTCCAAGCAAGAGAAGACGGGTTACGAGTTGACCGAACGGTGGGTAGCGGCAAGGAAGTTTCCTAGATGTCGCAACGAGAAACTAATTAGAGCGGTCTTAGTCTTGGAGGCTTCCATCATGCTCCAGGGCGCGAAACAGACTAACCTCGCGGTGGAGCCTAAGTATCACAAGCCACCACGGGTGCATGACCCGATGATGGAAGCGTCTCCAATCTTCAAGAATGAAGAAGCTCCTCGACTCAGAGATGCAACAGAATTGGAAGAATGGTTGATGGAAGCTGGTGCACGCCAAGTTTTTAGTGGAGTGTATGTAGATTCTCTAACTCAGACGGCCTTCCAAGGGGCAAGCAAGCTAGAGGATAAGTGTGCTAAGAAGGCACAATGCATTGAACTCGAGAAAACTACTAAAGGTGTAAAAGAGGCATACTGGAGAAGCTACACAGCTTGGGAAGCTTGGGGTGCAAGGTACAGTTGCCAGCTCAGTAGCTCGATGAAGAAGATGAAGTCTGCGCCAGTTGCTCCACTTGCATTTTTCTTTGCTCTTTTGCTCTCCTTGCTTGACAACTTTCCTAAGATGCATAGGCATGCAACAACGGGTTTGAGGCTCTTAAATGGCGATGCTGCTGAAAACATATTGCAAGCGGTTAGGGAAATGTTCAAGAACATAAGTATAATTTACTTGCCGCGTGTGTCGGAGCAAAGGGCAGCGGCACAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGCCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTTCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTCTTACTCGGAGCATCTAATTACGGAGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGATCTATATTGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGGCTATTGGCTATTCAGGCCTCCCCACCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAAGCTCATCGAATCCCTACTTGCTTTAGATCCTACACTTTGA 2835 0.4818 MAAYVASDPHFTDLSIFLAKAEGRRYRREREEDRAGEDGYQTDRTVKERGRAEEEDRAVQAGEDGLRADRTVGSGKEGEKTVGSDREEGKACRIVKGGNCRIVKGGNCQIVKGGNYGIVKEEKKLENLELSMRGLETKMEAVYKGLQELLRKMKERARQSEENSDGSQAYVNGKKEDQDRGCHEEQQNWRKGVELPIFDGVDPLNWVSRADNFFELQGMSEEEKLRLAYISMEKKARYWFRFWKRNAKNRSWEGLKEAMVIRFVEGNIGSVFERLAASKQSGIREEYVQAPNGKELPEPNCIELTNSNVRELPEPDGSRLLDPNVREWAEPKERGPTEPNRRGLPEPDGSRLLDPNVREWAEPKERGPTEPNRRGRPEPTVRKLLEPNGLVLEGRMKVLVGRADGKINALERTKNSLKWWAIEKNRGLVVFDTPVEGRARREVLKDIEDHFLKTYGSGKRVNRILDEEWKTLEEVLPPPKPTDLNWRTTDSEYRPYDNTRMKRSQEIKFHSSSLEDKVVLKWMRGEGIGGREKRTEREKMGTKLTERRTEWSKQEKTGYELTERWVAARKFPRCRNEKLIRAVLVLEASIMLQGAKQTNLAVEPKYHKPPRVHDPMMEASPIFKNEEAPRLRDATELEEWLMEAGARQVFSGVYVDSLTQTAFQGASKLEDKCAKKAQCIELEKTTKGVKEAYWRSYTAWEAWGARYSCQLSSSMKKMKSAPVAPLAFFFALLLSLLDNFPKMHRHATTGLRLLNGDAAENILQAVREMFKNISIIYLPRVSEQRAAAQLLSGLNHCHSRGALHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVSLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGDLYCGRPILPGKTEVEQLHRIFKLCGSPSEGYWLFRPPHHYRRCVAETFKEYPSAATKLIESLLALDPTL 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01228 944 SUPERFAMILY Protein kinase-like (PK-like) 777 943 IPR011009 -
Vimu5g01228 944 PANTHER CELL DIVISION PROTEIN KINASE 784 943 - -
Vimu5g01228 944 Pfam Protein kinase domain 783 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01228 944 Coils Coil 118 138 - -
Vimu5g01228 944 MobiDBLite consensus disorder prediction 156 185 - -
Vimu5g01228 944 MobiDBLite consensus disorder prediction 306 381 - -
Vimu5g01228 944 MobiDBLite consensus disorder prediction 24 84 - -
Vimu5g01228 944 MobiDBLite consensus disorder prediction 531 550 - -
Vimu5g01228 944 ProSiteProfiles Protein kinase domain profile. 635 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01228 944 Coils Coil 143 163 - -
Vimu5g01228 944 FunFam Mitogen-activated protein kinase 782 942 - -
Vimu5g01228 944 Gene3D Transferase(Phosphotransferase) domain 1 777 944 - -
Vimu5g01228 944 SMART serkin_6 679 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01228 944 MobiDBLite consensus disorder prediction 315 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01228 Vimu-Chr5 21693578 21699908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01228 789 943 Core Cell Cycle Gene Families AT5G10270 54.545 5.28e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu5g01228 Pkinase 4.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01228 - K08819 gmx:100775462 300.827