Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu5g01221 | ATGTCCGGTGTGGGCCCTATTTCCCAGGACTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCGGCCAAGAAGGACGAGAAAGCCGTCAACGCTGCTCGCCGCGCCGGCGCCGATATCGAAACCCAAAAAAAATGTTCGTTTCCAATACCCTCAATGAAAAGACCTCTGATTGGAGTTTTGTGTACAGATGAGAAAGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGAGAAGAAACTTACTCAGGCTCAGCTTGCTCAAGTGATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA | 399 | 0.4912 | MSGVGPISQDWEPVVLRKKAPTAAAKKDEKAVNAARRAGADIETQKKCSFPIPSMKRPLIGVLCTDEKVPTELKKAIMQARMEKKLTQAQLAQVINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK | 132 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu5g01221 | 132 | Coils | Coil | 77 | 97 | - | - | |
Vimu5g01221 | 132 | Pfam | Helix-turn-helix | 77 | 128 | IPR001387 | - | |
Vimu5g01221 | 132 | PANTHER | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 | 9 | 49 | - | - | |
Vimu5g01221 | 132 | Pfam | Multiprotein bridging factor 1 | 9 | 48 | IPR013729 | - | |
Vimu5g01221 | 132 | FunFam | Multiprotein bridging factor 1 | 63 | 132 | - | - | |
Vimu5g01221 | 132 | Gene3D | - | 64 | 132 | IPR010982 | GO:0003677 | |
Vimu5g01221 | 132 | ProSiteProfiles | Cro/C1-type HTH domain profile. | 77 | 131 | IPR001387 | - | |
Vimu5g01221 | 132 | SUPERFAMILY | lambda repressor-like DNA-binding domains | 71 | 128 | IPR010982 | GO:0003677 | |
Vimu5g01221 | 132 | CDD | HTH_XRE | 75 | 128 | IPR001387 | - | |
Vimu5g01221 | 132 | SMART | mbf_short4 | 76 | 131 | IPR001387 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu5g01221 | Vimu-Chr5 | 21493293 | 21495717 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | MBF1 | Vimu5g01221 | HTH_3 | 7.9e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu5g01221 | K03627 | - | gmx:100500420 | 194.512 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu5g01221 | 5 | 21493293 | 21495717 | Vimu5g01221 | 5 | 21493293 | 21495717 | ECH | |
Vimu4g01178 | 4 | 10544750 | 10547453 | Vimu5g01221 | 5 | 21493293 | 21495717 | PCT |