Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01221 ATGTCCGGTGTGGGCCCTATTTCCCAGGACTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCGGCCAAGAAGGACGAGAAAGCCGTCAACGCTGCTCGCCGCGCCGGCGCCGATATCGAAACCCAAAAAAAATGTTCGTTTCCAATACCCTCAATGAAAAGACCTCTGATTGGAGTTTTGTGTACAGATGAGAAAGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGAGAAGAAACTTACTCAGGCTCAGCTTGCTCAAGTGATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA 399 0.4912 MSGVGPISQDWEPVVLRKKAPTAAAKKDEKAVNAARRAGADIETQKKCSFPIPSMKRPLIGVLCTDEKVPTELKKAIMQARMEKKLTQAQLAQVINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01221 132 Coils Coil 77 97 - -
Vimu5g01221 132 Pfam Helix-turn-helix 77 128 IPR001387 -
Vimu5g01221 132 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 49 - -
Vimu5g01221 132 Pfam Multiprotein bridging factor 1 9 48 IPR013729 -
Vimu5g01221 132 FunFam Multiprotein bridging factor 1 63 132 - -
Vimu5g01221 132 Gene3D - 64 132 IPR010982 GO:0003677
Vimu5g01221 132 ProSiteProfiles Cro/C1-type HTH domain profile. 77 131 IPR001387 -
Vimu5g01221 132 SUPERFAMILY lambda repressor-like DNA-binding domains 71 128 IPR010982 GO:0003677
Vimu5g01221 132 CDD HTH_XRE 75 128 IPR001387 -
Vimu5g01221 132 SMART mbf_short4 76 131 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01221 Vimu-Chr5 21493293 21495717 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vimu5g01221 HTH_3 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01221 K03627 - gmx:100500420 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01221 5 21493293 21495717 Vimu5g01221 5 21493293 21495717 ECH
Vimu4g01178 4 10544750 10547453 Vimu5g01221 5 21493293 21495717 PCT