Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01209 ATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCTCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGTTGACACCCATTCTTTCTCCTATCAAGTATCTCATTGTTTTCCACCATCGGATGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGAGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATCCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCGGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATACTCACCTAGTCTCCGGTGCACTGCGGAAGATTCTACAGATATTACCCCAGATTACAACACTCCCCCTCAAGCTGGATCATACAAGATTCAACAAATTGCAGGGATTGGATTGCCATCAATAGTGGCAAACAGCAACAAAACTTCAAGGGACTTAACTGCCCTAAACAACGACAAGCCTTCAGGAAACATCTGTCCTGACAAAGGCAAACAGCAACATACCTGCAGCCTTCAGGAAACATCTGTCCTGACAGAGGCAAACAGCAACAAACCTGCAGGGACTACACTACCCTGCAGCGGCTGGAACTTTCTCCTCCCCACGACTGAACAGCAGAACGTGAAGGTGGAAGAACTGAAGAAAGGAAACATCGAAGATGGAGGTCAAACTGAAACAGGAAAAGAACATAGCATAAGTGAAAAAGCGGTGGCACAAGCGGCGGATGATCGAACCACTGTGCTCGAGAAACCAAAACTGGAAAACGAAGAGGACGCCGACTGTGCAATCAGTGGCATCAAATGGAAACGAGAGCTGAAACTTTCGTCGGGAGTAAAGGATGAAGAATCCTCCGGGGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCTTTCACTCACTCTCATGAACCCTCATCCTGAATCCAATTTGAATCAAAGACCAAGTCAGGAACGGAATCCACTCTTGCGAAGGCGGTCCAGTGAGTGGGGATGGGCTCATAAGGCTCCGGCGAGTGGGATACACGTGCCGGCGACGATGGCGGCGCGTGGAGGCTCCGTTGACGGAGCGACTTCCGACTCTGTGATCGCCGGTTCTGGGTGCACCTTTCTGCCCTATCGACGAAGACCCCAACTGGCGACAGCGGTGGTCGGACAGCGGCGGCGAAGTAGCAGTCGAAACCGGCGCGGTTGGCTGTCGTTCGAAGAGACGATCCAGATCCGCTGGTCACCGGTCGAAACTGCGACGGTGGCCGGCGGCGGACGGTGGTCGGTGATGGTTGACAGTGGAGAAACAAGCTTGTTGTTGGTGGAAACACATTACACACGGGAGCCAATGAGAGCGAGGGCATTGCTTAAAATACCAGTTTCAACTACTGGTCTGAAAGAGAATGGTCCAATAAAGCACAAAGGCAAAGAAGAGAATTTTAGGGGGCCTGCCGGCGACCATGGCGGTCGGCCGCCGGCAGATAGCGGAAACGGATCAGACAATCTGTGA 2178 0.4789 MSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQLTPILSPIKYLIVFHHRMAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRIPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTAEDSTDITPDYNTPPQAGSYKIQQIAGIGLPSIVANSNKTSRDLTALNNDKPSGNICPDKGKQQHTCSLQETSVLTEANSNKPAGTTLPCSGWNFLLPTTEQQNVKVEELKKGNIEDGGQTETGKEHSISEKAVAQAADDRTTVLEKPKLENEEDADCAISGIKWKRELKLSSGVKDEESSGEEAEDDDLPPPITKTNLSLTLMNPHPESNLNQRPSQERNPLLRRRSSEWGWAHKAPASGIHVPATMAARGGSVDGATSDSVIAGSGCTFLPYRRRPQLATAVVGQRRRSSSRNRRGWLSFEETIQIRWSPVETATVAGGGRWSVMVDSGETSLLLVETHYTREPMRARALLKIPVSTTGLKENGPIKHKGKEENFRGPAGDHGGRPPADSGNGSDNL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01209 725 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 327 - -
Vimu5g01209 725 MobiDBLite consensus disorder prediction 692 707 - -
Vimu5g01209 725 MobiDBLite consensus disorder prediction 498 519 - -
Vimu5g01209 725 MobiDBLite consensus disorder prediction 439 466 - -
Vimu5g01209 725 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Vimu5g01209 725 FunFam Shaggy-related protein kinase kappa 132 337 - -
Vimu5g01209 725 CDD STKc_GSK3 29 329 IPR039192 -
Vimu5g01209 725 ProSiteProfiles Protein kinase domain profile. 34 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01209 725 MobiDBLite consensus disorder prediction 530 549 - -
Vimu5g01209 725 MobiDBLite consensus disorder prediction 439 460 - -
Vimu5g01209 725 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01209 725 MobiDBLite consensus disorder prediction 530 545 - -
Vimu5g01209 725 Gene3D Transferase(Phosphotransferase) domain 1 132 343 - -
Vimu5g01209 725 MobiDBLite consensus disorder prediction 687 725 - -
Vimu5g01209 725 SMART serkin_6 34 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01209 725 Gene3D Phosphorylase Kinase; domain 1 19 131 - -
Vimu5g01209 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01209 Vimu-Chr5 21229950 21236478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01209 73 330 MAP Kinase Gene Family AT3G59790 36.059 1.24e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu5g01209 Pkinase 3.8e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01209 K14502 - gmx:100810924 600.512