Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g01206 | ATGATGTCCAGATCGTATACAAATCTTTTAGATTTGGCCTCTGGGAATTTCCCGGCAATGGGGAGGGAGTCTAGGGAGAGGAGGCGGATGCCGAGGGTTATGAGTGTTCCAGGGTTTCTCACTGAGGTAGATGATGATCAGGCAGTTAGTGTTTCCTCTGATAACCCGTCGACAATTACTACGGATAGAATGATCATTGTGGCTAACCAGTTACCATTGAAGGCAAAGCGAAGAGAGGACAACAAAGGGTGGTCTTTCAGTTGGAATGAAGATTCGTTACTTTTACAGCTTAAGGATGGACTTCCGGATGACATGGAAGTTCTTTATGTTGGTTCCTTACGCGTTGATATTGATCCAGCAGAACAGGATGACGTGTCTCAGAATTTGTTGGATAAATTCAAATGTGTTCCGACTTTTTTACCTGCTGACGTTTTGGCAAAATTTTATGATGGTTTTTGTAAAAGGCAGTTGTGGCCACTTTTTCATTACATGTTACCATTTTCAACTGACAAAAGCCATCGATTTGATCGCACTTTGTGGGAAGCTTATGTGCTAGCAAACAAGCTATTTTTTCAGAAGGTAGTTGAAATAATAAACCCTGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTGCCTACTTTTATTAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATTTACAGGACTCTTCCTGTAAGGGAAGAGATACTGAAAGCTTTGCTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGCTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCTAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGGACCATCAGTATTAAGATTATGCCTGTTGGTATTCACATGGGTCGGATTGATTCAGTCATGAGAATGGCAGTTGAGGAGACCAAGGTTAAGGAGCTCAAACAGAAATTTGAAGGAAAAACCATCTTACTTGGTGTTGATGACATGGACATTTTTAAAGGAATAAATTTGAAGATTTTGGCAATGGAGCAGATGCTAAGACAGCATCCTAAATGGCAAGGAAGAGCTGTTCTGGTCCAAATAGTTAATCCTGCTAGAGGGAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCACCAGGATCAACAGAGTGTTTGGGCGGCCTGGTTATGAACCTATTGTTTTTATAGATAGAGCAGTATCTATTGCTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTCACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGATTCTGAATCATGTTCTAATGCCAGTGACCCAAAGAAGAGTATGCTGGTGATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATTCGTGTTAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCTATCTCAATGAGTGATGGGGAGAAACAGTTGCGGCATGAGAAGCATTACCGGTATGTCAGCACCCATGATGTTGCTTACTGGTCACGTAGTTTTTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAGAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGATCCTAATTTTAAAAAGCTCTCAATTGATGCTATGGTCTCAGCTTACAAGAGGGCAAAGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCGCAGAACTCCATTAACAAGAGTCCAAGCAAGGAGGTCTTGTCTATTATGGAATCACTTAGTGCAGACCCAAAAAATATTGTTTTTATTGTTAGTGGAAGGGGGAGAGAGAGCTTAAGTGAGTGGTTTGCTCCCTGCAGAAAACTTGGAATTGCCGCAGAACATGGGTACTTCTTGAGATGGGGCCACAATGGAGAATGGGAAATTTGTGGTAAGTCCTCCGACTTTGGATGGATGCAGATAGCTGAACCTGTGATGAAACTATATACTGAGGCAACTGATGGCTCCTCAATCGAAAGAAAAGAAAGTGCTTTAGTCTGGCAGTACCGTGATGCAGACCTTGGTTTTGGATCTTCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCACAGGATGTGAGCAAAGGTTTGGTGGCCGAAAGGATATTTTCGTCAATGGACGGGAAAGGCAAGCAGGCTGACTTTGTGCTGTGTGTTGGCGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGTAGTGCAATTTCAAGGAATATTCTTGCCTCCAATGCTTCTGTGTTTGCTTGCACAGTTGGACAAAAGCCAAGCAAAGCAAAGTATTATCTGGATGATACAACCGAGGTAACAAGCATGCTAGAATCTTTGGCCGAAGAATCAGATTCTTCACCCTGCATACAAGAAACTGGGGATTCCTCTCGGAGGCAAGTATCAGTTCAGGTTTCTCTGATTTAG | 2607 | 0.4223 | MMSRSYTNLLDLASGNFPAMGRESRERRRMPRVMSVPGFLTEVDDDQAVSVSSDNPSTITTDRMIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQNLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIDSVMRMAVEETKVKELKQKFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCTRINRVFGRPGYEPIVFIDRAVSIAEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISDSESCSNASDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKSRAILLDYDGTVMPQNSINKSPSKEVLSIMESLSADPKNIVFIVSGRGRESLSEWFAPCRKLGIAAEHGYFLRWGHNGEWEICGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMDGKGKQADFVLCVGDDRSDEDMFEIVSSAISRNILASNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDSSPCIQETGDSSRRQVSVQVSLI | 868 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01206 | 868 | SUPERFAMILY | HAD-like | 593 | 841 | IPR036412 | - | |
| Vimu5g01206 | 868 | NCBIfam | trehalose-phosphatase | 590 | 841 | IPR003337 | GO:0003824|GO:0005992 | |
| Vimu5g01206 | 868 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 63 | 550 | - | - | |
| Vimu5g01206 | 868 | FunFam | Trehalose-6-phosphate synthase 2 | 676 | 755 | - | - | |
| Vimu5g01206 | 868 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 317 | 530 | - | - | |
| Vimu5g01206 | 868 | NCBIfam | HAD-IIB family hydrolase | 595 | 799 | IPR006379 | - | |
| Vimu5g01206 | 868 | Gene3D | - | 592 | 693 | IPR023214 | - | |
| Vimu5g01206 | 868 | Gene3D | - | 721 | 851 | IPR023214 | - | |
| Vimu5g01206 | 868 | CDD | GT20_TPS | 63 | 546 | IPR001830 | GO:0003824|GO:0005992 | |
| Vimu5g01206 | 868 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 722 | 853 | - | - | |
| Vimu5g01206 | 868 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 592 | 709 | - | - | |
| Vimu5g01206 | 868 | Pfam | Trehalose-phosphatase | 596 | 830 | IPR003337 | GO:0003824|GO:0005992 | |
| Vimu5g01206 | 868 | Pfam | Glycosyltransferase family 20 | 63 | 546 | IPR001830 | GO:0003824|GO:0005992 | |
| Vimu5g01206 | 868 | Gene3D | Glycogen Phosphorylase B; | 317 | 530 | - | - | |
| Vimu5g01206 | 868 | Gene3D | Glycogen Phosphorylase B; | 56 | 316 | - | - | |
| Vimu5g01206 | 868 | CDD | HAD_TPP | 594 | 833 | - | - | |
| Vimu5g01206 | 868 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 56 | 315 | - | - | |
| Vimu5g01206 | 868 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 31 | 842 | IPR001830 | GO:0003824|GO:0005992 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g01206 | Vimu-Chr5 | 21061746 | 21065555 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g01206 | 1 | 847 | Trehalose Biosynthesis Gene Families | AT1G06410 | 78.749 | 0.0 | 1396 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g01206 | K16055 | - | gmx:100800847 | 1633.62 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu5g01206 | 5 | 21061746 | 21065555 | Vimu5g01206 | 5 | 21061746 | 21065555 | ECH |