Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01184 ATGAGCCACCACAGGCACAACTTCACAAATCTGCAACGGCAAGGAGGTTTTAGATCCTATGATGCCCACACTTACAATCATCATGAATCCAATGAAGTGCCTGTGTTTTACAGATCTAACTCTACTCATGCCACCGATGAAAGAACTTCCGATGTATTACCTCGACAACGGGTTTGGGCATGCATACATCCTGTAGGATTCCACCACATACCTTATTTTCCATCAGCAGCACCTAGAAGACAACAAATTATTCACAATGAGAATATGGGAAGGCTGAGAGATATTTTCCTTCAGCCACCTTCAAGATATACATTCCAAACAAGCACACAAGCTCCCCCAGTGGTAGAAATTTCCAAATCAACAGTTTTGAGCAAGCTTGAGAAAGTAGTGTATGCTAGGAAGCTGAACTTATATTACAGAAAGAATGATGGAGAAAAACATTTGAAAGAGAAGAAGGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTGACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTGCCGTGGCTAACAACTAAGGGCCAGTGCCCAGTTTGTAGGCGTGTGATTTGTGAGATGGGATGTGGGAACTCTTCATCCTTCACCAACAATAACTGGACCACTTTGGAATCTAGCAACCTATTTAATGGAGAGCTTTTATCAGTTTTTAGGGACATGGAAGAAGCTTTTCAATTCGGCATATGA 750 0.4187 MSHHRHNFTNLQRQGGFRSYDAHTYNHHESNEVPVFYRSNSTHATDERTSDVLPRQRVWACIHPVGFHHIPYFPSAAPRRQQIIHNENMGRLRDIFLQPPSRYTFQTSTQAPPVVEISKSTVLSKLEKVVYARKLNLYYRKNDGEKHLKEKKEKDEDGKRCAICLEDFKTGEEVMLTPCKHMFHEDCIVPWLTTKGQCPVCRRVICEMGCGNSSSFTNNNWTTLESSNLFNGELLSVFRDMEEAFQFGI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01184 249 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vimu5g01184 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 206 IPR013083 -
Vimu5g01184 249 Pfam Ring finger domain 160 202 IPR001841 -
Vimu5g01184 249 SUPERFAMILY RING/U-box 151 208 - -
Vimu5g01184 249 PANTHER SI:CH211-59O9.10 153 207 - -
Vimu5g01184 249 SMART ring_2 161 201 IPR001841 -
Vimu5g01184 249 SMART ringv_2 160 202 IPR011016 GO:0008270
Vimu5g01184 249 FunFam RING/U-box superfamily protein 145 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01184 Vimu-Chr5 20414881 20416182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01184 128 248 C3H Transcription Factor Family AT3G58720 53.968 3.30e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01184 - - vra:106780201 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01184 5 20414881 20416182 Vimu5g01184 5 20414881 20416182 ECH