Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01183 ATGGAACTTCAGGCTTCAGAGAAGAAACTGTCGAATCCTATGAGGGAGATAAAGGTACAGAAGCTCGTCCTCAATATTTCTGTTGGCGAGAGTGGAGATCGCCTCACCAGAGCTGCAAAGGTGTTGGAACAACTGAGTGGCCAAACCCCAGTGTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGGATTAGAAGAAACGAGAAGATTGCTTGTTATGTCACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAAAGTGGTTTGAAGGTGAAGGAGTATGAACTTCTCAGAAAGAACTTCAGCGATACTGGCTGCTTTGGCTTTGGCATTCAAGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACCGGTATTTATGGAATGGATTTCTTTGTTGTTTTGGAGCGTCCTGGCTACCGTGTTGGCCGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGAGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTGTTTAG 555 0.4541 MELQASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01183 184 FunFam 60S ribosomal protein L11 5 177 - -
Vimu5g01183 184 SUPERFAMILY RL5-like 11 176 IPR022803 -
Vimu5g01183 184 Pfam ribosomal L5P family C-terminus 69 167 IPR031309 -
Vimu5g01183 184 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 175 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vimu5g01183 184 Gene3D - 4 180 IPR022803 -
Vimu5g01183 184 Pfam Ribosomal protein L5 12 65 IPR031310 -
Vimu5g01183 184 ProSitePatterns Ribosomal protein L5 signature. 42 58 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vimu5g01183 184 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 5 179 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01183 Vimu-Chr5 20399500 20401250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01183 5 184 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.444 6.48e-128 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01183 K02868 - gmx:100499863 339.347