Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01162 ATGGCTACTACAATAACAGAGCTCGAGTCCTCATCAAATGCCTCGCACGTGCTCAATTACACCCCCACCCCCACAACCTCCGACGACGACGAAGAGGAGGAGCATGGAGAAGGCAACGAGAACGACTCCCCCGGCATGGGATGCTGGTCATCGACGGCGTGCGACGGCGCCGGCCGGAGAGCGTTGGGGAAGGTGTTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGGCGCGGGGTTGTTCGTGGACCCTCTGTTCTTCTACGCGCTCTCTGTTAGCGACTCCTGCATGTGCGTTTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACAGACGCGCTACACCTGTGGAACATGGTGATCAGAATGAAGATGGCCAAACGCGCGCTCAGAGACACACGGCCGGGCACCGTCGCGTTAGGGTATCTTAAGTCACGGACGGGATTCGTTTTTGATTTGTTCGTGATTCTTCCTCTGCCACAGATAGTGCTTTGGGTGGCAATTCCGTCGTTATTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTGTTCTTAATAATATTTCTGTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTACGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTTGTTGCTTCCCACGCTGCAGGAGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCACAGTGTCTGAAAGTGCAGTGTGGAAAAACAAGTGGTTGTGGCACAAACATTCTGTCATGTCAAAGCCCTATATATTATGGAAGCAAGAGTTTGTTAGTTAGGGATAGAGCAAGGTTGGCTTGGGCAGAGAAGAGGGACGTGTGGCACACATGCTTGAAGGGCCCTGATGGCTACACCTATGGAGCTTATAGATGGACCGTTCAGCTTGTCACTAATGATAATCGTTTGGAGAAGATACTCTTCCCTATCTTCTGGGGCCTAATGACTCTTAGTACAACAGAATGGCTAGAAGTGGTTTTCAACATCATTGTTCTGACCAGTGGCCTTCTTCTTGTGACTATGTTGATCGGAAACATCAAGGTTTTTTTGCATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCACAAGGGTTTCGACAACGTGTGCGTAATTATGAGAGACAACGTTGGGCTGCCATGAGAGGTGTCGATGAATGCGAGATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAATACCATCTTTGTCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGAGCTAGTTCTTGAGAACATCTGTGACCGTGTGAAGTCTCTGATTTTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTCGTGGTGAGGGGCCACCTTCAAAGCAGCCAAGTTCTGAGGGATGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATCGAACGTCTTCCGCCATCTTCATCCACACTCATCACCTTGGAAACCACAGAGGCTTTTGGCCTTGAAGCCGACGACGTCAAATACGTCACCCAACATTTCAGGTATACTTTTGTCAAAGAAAAGGTCAAGAGAAGTGCCAGGTATTACTCACCAGGCTGGCGAACTTGGGCTGCCGTCGCCATTCAATTGGCTTGGAGAAGGTACAGGCATAGGTTGACTTTGACCTCTCTCTCCTTCATAAGACCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 1959 0.4911 MATTITELESSSNASHVLNYTPTPTTSDDDEEEEHGEGNENDSPGMGCWSSTACDGAGRRALGKVLDPRAKWVQEWNRVFLLVCGAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVIRMKMAKRALRDTRPGTVALGYLKSRTGFVFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAQCLKVQCGKTSGCGTNILSCQSPIYYGSKSLLVRDRARLAWAEKRDVWHTCLKGPDGYTYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEADDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01162 652 FunFam cyclic nucleotide-gated ion channel 4 461 571 - -
Vimu5g01162 652 MobiDBLite consensus disorder prediction 1 47 - -
Vimu5g01162 652 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 617 - -
Vimu5g01162 652 FunFam Cyclic nucleotide-gated ion channel 1 390 454 - -
Vimu5g01162 652 Gene3D Helix hairpin bin 388 454 - -
Vimu5g01162 652 ProSiteProfiles cAMP/cGMP binding motif profile. 463 509 IPR000595 -
Vimu5g01162 652 SUPERFAMILY Voltage-gated potassium channels 68 384 - -
Vimu5g01162 652 Gene3D Jelly Rolls 461 571 IPR014710 -
Vimu5g01162 652 MobiDBLite consensus disorder prediction 1 25 - -
Vimu5g01162 652 CDD CAP_ED 463 561 IPR000595 -
Vimu5g01162 652 SUPERFAMILY cAMP-binding domain-like 389 569 IPR018490 -
Vimu5g01162 652 Pfam Ion transport protein 76 380 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01162 Vimu-Chr5 19648263 19657124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01162 62 651 Ion Channels AT5G54250 76.737 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01162 K05391 - gmx:100796761 1142.1