Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01152 ATGATTACTCCGACCCAACCCCTGAGAGATAGTATCAATGAGAATGTCACTCTTGTCTCAACAAATGGAACCTTTGAAGCAGGATTCTTCAGCCCTGGAAATTCCCGTATCCGTTACCTTGGAATTTGGTACAAAACCATATCCCCCAGAACAGTGGTTTGGGTGGCCAACAAAGAAACACCACTTCAAGACCATTCTGGAGTCTTAGAACTAGACAGTGATCAAGGGCTTCTTAGTATAAAAAATGGCGCAGGAGCCAAAATATGGTCCTCAAATGCATCATACATACCAAGCAAACCAGTTTTTGTGGAGTTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGCCATGATGATAACTTTTTATGGGAAAGCTTTGATTACCCTGGTGATACTTTTCTTCCAGGAATGAAGCTTGGAATGAACTTGAAAACTGGTCATCAGCGAGCTCTGAGATCTTGGAAATCCCTCAACGATCCTAGTCCAGGTGAATTTTCATTTGGTGTTGATACTCGTGGCCTTCCTCAACTAGTTATCACGAAGAGTGATGACATAGTTTATAGACCAGGCTCTTGGAATGGTGTTAGAGTCACAGGAGTACCTGCACAAGAGGCTCACCCATTAACCACATCCCTTTTTGTTATGAATGAAGATGAAATCTTCTATGAGATTCAACTCTTGAATAGTTCAACTAAACTGAGAAGCAGATTGCTCCCAGAAGGGTATCAAATACGTTTATTATGGTCAGATGAGGGTGAAAAATGGGATACTGTATACTCTGGTTCGTTTGATGAGTGTGAGAGTTATGGTATGTGTGGTGCTAATAGTATTTGCAACGTGAGTGGAGCACCTCAACACTGCGAATGTTTGAGTGGATTCAAATCCAAAGCTGCAGATTCAACTTGTGATCGAATTAGAGCTCTAGATTGCAACAAGGGAGATAGTTTTAAGAAGTACGAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATGCGAGAATGAGTCTTGAAGAATGCGAGAAATTGTGCTTGAGCAACTGCTCTTGTACTGCGTATGCTCAATTGAATATCAGTGCCAACGGAAGTGGCTGCTTGCAATGGTTTAATGACATTGTTGACATCAGGACACTGGCACAGGATGGACAAGATTTTTATCTGAGAATTGCAGCTTCGAAATTTCAAGATCTGATAATTTTTTTAGTGGCAGAAACAAAATACTGGAAGGAGAAGAATAAGAAGGATGACATTGATTTACCAATATTCGATTTTTTATACATCTGCAATGCCACAAATAACTTTTCTGAGAGTAATAAATTAGGACAAGGGGGATTTGGACCAGTGTACAAGGGCATATTATCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCCAAAACTTCGGGACAAGGTTTGGAAGAGTTTAAGAATGAAGTAATGTTGATTGCAAAACTTCAACACCGCAATCTGCAAGAGGAAAAGCTGCTAATTTATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCAACAAGAAGTACATCAATAGGTTGGGCTAAGAGATTTGAAATTATTGATGGAATTGCTAGAGGACTCCTCTATCTTCATCAAGATTCTAGACTGAAAATCATTCATAGGGATCTCAAGACTAGTAATGTTCTTCTTGACAGCAATATGAAACCAAAAATATCAGATTTTGGTATGGCTAGGACATTTAACCTAGATCAAGATGAAGGAAACACAAATAAAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTGCATGGATCATTTTCAGTCAAATCAGATGTATTTAGTTTTGGGGTAATTGTATTGGAGATAATAAGTGGGAGGAAGAATAGAGGATTCCGTGACCCAGATAATGAGCTAAATCTTCTTGGACATGCATGGAGATTATGGATTGAGAAAAGGCCGATGGAACTAATGGGTGAGTCAATGGAGAATGCAGTTGGTCGATCTGAAATATTAAGATATATTCATATTGGTTTGTTGTGCGTACAACATAGACCAGAGGATAGACCAAACATGTCTTCGGTAGTTTTAATGTTGAACGGTGAAAAGTTATTGCCTGAGCCAAGTCAACCTGGATTTTACACGGGAAGAAATAACTTGACCATGACAGATTCTTCTTTAAGAAATTTGGATGCGTATTCTCTCAACGAAATGTCTGAGACATTGCTTCTGGCTAGATAG 2235 0.3915 MITPTQPLRDSINENVTLVSTNGTFEAGFFSPGNSRIRYLGIWYKTISPRTVVWVANKETPLQDHSGVLELDSDQGLLSIKNGAGAKIWSSNASYIPSKPVFVELLESGNMVVKDGHDDNFLWESFDYPGDTFLPGMKLGMNLKTGHQRALRSWKSLNDPSPGEFSFGVDTRGLPQLVITKSDDIVYRPGSWNGVRVTGVPAQEAHPLTTSLFVMNEDEIFYEIQLLNSSTKLRSRLLPEGYQIRLLWSDEGEKWDTVYSGSFDECESYGMCGANSICNVSGAPQHCECLSGFKSKAADSTCDRIRALDCNKGDSFKKYEGMKLPDTSSSWYDARMSLEECEKLCLSNCSCTAYAQLNISANGSGCLQWFNDIVDIRTLAQDGQDFYLRIAASKFQDLIIFLVAETKYWKEKNKKDDIDLPIFDFLYICNATNNFSESNKLGQGGFGPVYKGILSDGQEIAVKRLSKTSGQGLEEFKNEVMLIAKLQHRNLQEEKLLIYEFMPNRSLDYFIFDSTRSTSIGWAKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMKPKISDFGMARTFNLDQDEGNTNKVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFRDPDNELNLLGHAWRLWIEKRPMELMGESMENAVGRSEILRYIHIGLLCVQHRPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGRNNLTMTDSSLRNLDAYSLNEMSETLLLAR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01152 744 ProSiteProfiles PAN/Apple domain profile. 310 391 IPR003609 -
Vimu5g01152 744 FunFam Os08g0179000 protein 405 501 - -
Vimu5g01152 744 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 684 - -
Vimu5g01152 744 CDD B_lectin 11 129 IPR001480 -
Vimu5g01152 744 Pfam S-locus glycoprotein domain 187 296 IPR000858 GO:0048544
Vimu5g01152 744 Gene3D Phosphorylase Kinase; domain 1 403 501 - -
Vimu5g01152 744 CDD PAN_AP_plant 308 391 - -
Vimu5g01152 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vimu5g01152 744 ProSiteProfiles Protein kinase domain profile. 435 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01152 744 SMART serkin_6 435 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01152 744 Pfam D-mannose binding lectin 51 155 IPR001480 -
Vimu5g01152 744 SMART blect_4 9 129 IPR001480 -
Vimu5g01152 744 ProSiteProfiles Bulb-type lectin domain profile. 3 126 IPR001480 -
Vimu5g01152 744 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 502 705 - -
Vimu5g01152 744 SMART ntp_6 311 390 IPR003609 -
Vimu5g01152 744 Gene3D Transferase(Phosphotransferase) domain 1 502 703 - -
Vimu5g01152 744 Gene3D Hepatocyte Growth Factor 307 390 - -
Vimu5g01152 744 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 126 - -
Vimu5g01152 744 Pfam Protein tyrosine and serine/threonine kinase 438 695 IPR001245 GO:0004672|GO:0006468
Vimu5g01152 744 SUPERFAMILY Protein kinase-like (PK-like) 420 712 IPR011009 -
Vimu5g01152 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 52 160 IPR036426 -
Vimu5g01152 744 PIRSF SRK 401 744 IPR024171 GO:0004674
Vimu5g01152 744 PIRSF SRK 1 407 IPR024171 GO:0004674
Vimu5g01152 744 Gene3D - 3 126 IPR036426 -
Vimu5g01152 744 Pfam PAN-like domain 310 376 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01152 Vimu-Chr5 19315297 19320085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01152 423 711 Receptor kinase-like Gene Family AT4G23230 56.522 9.95e-119 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g01152 PK_Tyr_Ser-Thr 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01152 - - vum:124820888 1388.63