Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01148 TTGGACAAAACTCAATCTCTTCAATTACTTCGTAAGAAAGCTTTCAGATCGAATGATATTGGGAAAGAACATGAAAGGTTGACATTAGATATACTGAAGTATGTGAAGGGTCTTCCATTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAACTGCATTGATGTTGCGAATAAGTTATGATGGATTGGAGAATATAAAGAAAGAAATATTTCTAGATATTGCTTGTTTATGCTCCAATTATAATTTCTACTCATGGGAGCCAACAGTGAAGAAACTTTTAGACTATCGACAATTTTATCCTGACATTGGTATGAAGGAAGCCGAAAATGTTGAAGCTATATTTATTGAACAACCTCAAAAAGAGTTTCTACAAGGAAGAATAAGAGTGGATGCTTTATCAAAAATGGATCACCTTGAGATTCTCATTCTGAGGAATGTGAACTGTTATGGAACTCTCAATTTCATTTCTAATGAACTGAGATATCTATTTTGGAATCACTTTCCTTGGTTGTCTTTGCCTTTCTTTCCAGATCAACTTGTAGAATTGATCCTACATCATAGCAATATCAAGCTATTATGGGAAGGAAAAAAGTGTCCGCCTAATTTGAGAAATTTGGATATGAGTCACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAATCTCGAAGGATGTATACAACTAGTCCACATCCATCCATCCATTGGTATTATGAGAGACCTTCGTCGTTTGAATTTGAAAAGTTGTAAAAATCTTATTGAGGTGTTAGACTTAAGTGAGATCTTCCCTACAACGAAGTACGGATCTGGTGGCACCGCTGTTGGATCTGCGTCTGATGACTACCGTGGATCTGCGACTGGGTTGGGGTGCATGGCTGGCGTGTTGTCCGCCCTTCGAATTGCGGTTATGGCGAACCGTAGGTGGATCTGCGTCTGGGTGGGGTGCATGGCCGACGTGTTGTCCGCCCTTCGAATCGCGGTTACGGTTTACTTGGTCCCTCGGATGGAAATTGTTATTCCCGGAAGTGAAATTCCAAAATGGTTCAGTAAACAAAAGGCAAGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGTTCTATTTGTCACACACGAAGGTCCTATGAATTTGGGTGAAAGAGATTATCTTACAGACGCTACTCTTGTTTACGGTGTCAATAATGTCATCAACTTTGGGCCAAAAAGGTATTCAGGAGTTTCTATAAAATTCAAGAAAGATCTGGTGACAGTTGGGTTAGATTATTTGTTGATAGTGTTTTACTCTCGACAAGAATTCATTCATCTTCTAAATAGACATTCAGATACCATGCATGATAGGAGTCCTCCAGGTTTACGTTTTATGGTGAAGAACTGCGGGTATCGTTGGTTAAGCCTCCCATTTGGATTCAACTTTGAATTTGAGGCTTCTGGGGTGAGACTAGCTAAACTTGGTGACATTCCCATGCGACAACTTCAGCCCTCACTGTGCCCTGGCTCAGCTCTGTCTAACTTCTGTCCAGCAGCTTGGTTCAGCATTTAG 1620 0.4012 MDKTQSLQLLRKKAFRSNDIGKEHERLTLDILKYVKGLPLAIEVLGSFLLDRDVCEWRTALMLRISYDGLENIKKEIFLDIACLCSNYNFYSWEPTVKKLLDYRQFYPDIGMKEAENVEAIFIEQPQKEFLQGRIRVDALSKMDHLEILILRNVNCYGTLNFISNELRYLFWNHFPWLSLPFFPDQLVELILHHSNIKLLWEGKKCPPNLRNLDMSHSKNLIEVPDLSEVPRLTDLNLEGCIQLVHIHPSIGIMRDLRRLNLKSCKNLIEVLDLSEIFPTTKYGSGGTAVGSASDDYRGSATGLGCMAGVLSALRIAVMANRRWICVWVGCMADVLSALRIAVTVYLVPRMEIVIPGSEIPKWFSKQKASTSISMDPSAVIDDPNWIGVSICVLFVTHEGPMNLGERDYLTDATLVYGVNNVINFGPKRYSGVSIKFKKDLVTVGLDYLLIVFYSRQEFIHLLNRHSDTMHDRSPPGLRFMVKNCGYRWLSLPFGFNFEFEASGVRLAKLGDIPMRQLQPSLCPGSALSNFCPAAWFSI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01148 539 Gene3D Ribonuclease Inhibitor 131 281 IPR032675 -
Vimu5g01148 539 Gene3D - 1 80 IPR042197 -
Vimu5g01148 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 274 IPR044974 GO:0006952
Vimu5g01148 539 SUPERFAMILY L domain-like 136 272 - -
Vimu5g01148 539 Pfam Leucine Rich Repeat 186 205 IPR011713 -
Vimu5g01148 539 PRINTS Disease resistance protein signature 252 268 - -
Vimu5g01148 539 PRINTS Disease resistance protein signature 35 49 - -
Vimu5g01148 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 81 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01148 Vimu-Chr5 19256309 19263401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01148 93 280 WRKY Transcription Factor Family AT5G45050 28.431 1.84e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01148 - - vun:114168792 364.77