Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01143 ATGGCTTGCAACAAAAGTCAACGGAGCTCTTCATCACACACCAAGAATTTTGATGTGTTTGTTAGCTTTAGAGGTGCAGATACTCGTAACGGTTTCACCAATCACCTTTTTGCAGCTCTTCAAAGAAAAGGAGTTGTTGCTTTCAGAGATGACCAAACAATCCAGAAAGGAGACTTTTTGGAGTCTGAACTCTTGCTCGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCGTCGATTGGATTGAAGTAACAGGTCGAAGTTTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGAAAACAGAGTGGAGAGTTTTCAAAAGCTTTTTCTGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGGATGGAGGGCAGCTCTCAAAACAAGCTGCGATCGTTGTGGGTGGGATGTGCAAAATAAACAGCAATATGAAGAAATTGAAAACGTTGTTGAAGAGGTAATCAACATATTGAGTCGTAATCAAATTTGGAATTTTGGCGATGATTTAGTTGACATGCATTCTCGTCTTAAAAAATTAGAAGAACTTCTTGATCTGAGTGCTAATGATATTGTTCACCTTGTGGGAATTTGTGGAATGGGTGGAATAGGAAAGACCACACTTGCAACTGCATTGTTCAATAAAATCTCTCCTCAATTTAATGCTTGTTGTTACCTTGATGATTTAAGCAAAATTTATTGTAATTTTGGAGCAGCAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAATATCGAGATACACAATGCTTCCCATGGAACTATGTTGATAAGAACTAGATTATGTCACTTAAAAGCGCTTGTTGTTGTTGATAATGTTGATCAAGTTGAACAATTAAAGAAATTGGGTTTGCAATCTGAATATCTGGGTGCAGGGAGCAGAATCATCATAATTTCTAGAAATTGTCGTATCTTACAAAATTACGGAGTAAATAAAGTTTACGAAGTTCAAGTCTTGGACAAAACTCAATCTCTTCAATTACTTCGCAAGAAAGCTTTCAGATCGAATGATATTGGGAAAGAACATGAAGGGTTGACATTAGATATACTGAAGTATGTGAATGGTCTTCCATTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAAGTGCATTGACTAGAATGGAAGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGAATAAGTTATGATGGATTGGAGAATATAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCGATAATAATTCCTACTCATGGGAGCCAGCAGTGATGAAACTTTTAGACTATCGACAATGTTATCCTGACATTGGTATGAAAGTTCTGATTGAGAAGTCACTTATAAGTTGTCAAAATGCGACTATTAAAATGCATGACTTGTTAAAAGAGTTGGGTAAGAGTATTGTCCGAGAAAAAGCACCCAAAGAACCAAGGAAGTGGAGCAGGTTATGGAACTACAAGGATCTCCAAAAAGTCATGAAAATAAATAAGGAAGCCGAAAATGTTGAAGCTATATTTATTGAACAACATCAAAAAGAGTTTCTACAAGGAAGAATAAGAGTGGATGCTTTATCAAAAATGGATCACCTTGAGATGCTCATTCTGAGGAATGTGAACTATTATGGAACTCTCAATTTCGTTTCTAATGAACTGAGATATCTAGTTTGGGATCACTTTCCTTGGTTGTCTTTGCCATCAACTTTCTTTGCAGATCAACTTGTAGAATTGATCCTACATCATAGCAATATCAAGCAATTATGGGAAGGAAAAAAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGACACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAATCTCGAAGGATGTATACAACTGGTCCACATCCATCCATCACTTGGTATTCTGAGAGACCTTCGTAGTTTGAGTTTGAAAAGTTGTAAAAATCTTATTGAGGTGTCAGACTTAAGTGAGGTTTCATGTCTCACGAGTCTTAATCTTGAAGGATGCATAGAAGTCGTCCATATTGATCCGTCCATTGGTATTCTAAGAGAACTTCGTTATTTGAATTTGAAGGATTGTAAAAATCTTGTCCTTAATCTGAATATCCTTTTTGGGATCAGTTCACTCAAGACCTTAAATATCTCCGGCTGTTCAAAATTACTTAATAGTAAGATGTTAATGGACCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCCATCTTTTCTACCCTCCAAAACCTCAAGATTCACTTGGTTTGTTATCGTCTTCTCTGTCTTTCTCTGTCCCGTGTTTGTGTTATCTTGACATAAGCTTTTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTACGTTCTTTAAAAGAATTAAATTTGGTGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCAATCTTCGATGTTTGAACTTGACACACTGCAAAGAGCTAAAATATTTACCCGAGCTTCCAACAATACAAGAAAAAACAATTGACGGATGTGATAGGCGCTTATACACTTTTGATTGCCCCAAGTTGAGTGATTTGGAGCACTGTTATAGCATAGTTTTTTCTTGGATGACGAAAAATCTTGAGGTTTACTTGGATCCTCAGATGGAAATTGTTATTCCTGGAAGTGAAATTCCAAAATGGTTCAGTAAACAAAAGGCTGGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGTTCTATTTGTCACACACGAAGGTCCTATGAATATGGATGAAATAAATTATCCTACAAACGCTACTCTTTTTTACGGTGTCAATAATGTCATCAACTTTGGGCCAAAAAGGTATTCAGGAGTTTCTATAATATTCAAGAAAGATCTGGTGACAGTTGGGTTAGATTATTTGTTGATAGTGTTTTACTCTCGACAAGAATTCATTCATCTTCTAAATGAACATTCAGATACCATGCATGATCTTCAAGCAGTTAAATTTGAAACTATGGTTAAGAGTCTTCCAGGTTTACGTTTTATGGTGAAGAACTGCGGGTATCGTTTGGTATTTAAGGAGGATCTTCAACAATTCAACTCAAACAAGTTTTTCAACAGAAATTCTTCGTCACGGAAGAGGAAGCTTCTAACAAGCGAGTAA 3357 0.3646 MACNKSQRSSSSHTKNFDVFVSFRGADTRNGFTNHLFAALQRKGVVAFRDDQTIQKGDFLESELLLAIEGSRVFIVVFSKDYASSTWCMKELTKIVDWIEVTGRSLLPIFYDVTPSEVRKQSGEFSKAFSEHEERFKDDLEMVKGWRAALKTSCDRCGWDVQNKQQYEEIENVVEEVINILSRNQIWNFGDDLVDMHSRLKKLEELLDLSANDIVHLVGICGMGGIGKTTLATALFNKISPQFNACCYLDDLSKIYCNFGAASAQKQLLCQALNQGNIEIHNASHGTMLIRTRLCHLKALVVVDNVDQVEQLKKLGLQSEYLGAGSRIIIISRNCRILQNYGVNKVYEVQVLDKTQSLQLLRKKAFRSNDIGKEHEGLTLDILKYVNGLPLAIEVLGSFLLDRDVCEWRSALTRMEENPSKDIMDVLRISYDGLENIEKEIFLDIACFFSDNNSYSWEPAVMKLLDYRQCYPDIGMKVLIEKSLISCQNATIKMHDLLKELGKSIVREKAPKEPRKWSRLWNYKDLQKVMKINKEAENVEAIFIEQHQKEFLQGRIRVDALSKMDHLEMLILRNVNYYGTLNFVSNELRYLVWDHFPWLSLPSTFFADQLVELILHHSNIKQLWEGKKCLPNLRNLDLRHSKNLIEVPDLSEVPRLTDLNLEGCIQLVHIHPSLGILRDLRSLSLKSCKNLIEVSDLSEVSCLTSLNLEGCIEVVHIDPSIGILRELRYLNLKDCKNLVLNLNILFGISSLKTLNISGCSKLLNSKMLMDPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLPFHLFYPPKPQDSLGLLSSSLSFSVPCLCYLDISFCNLLQIPDEIGNLRSLKELNLVGNKFVTLPSTIKQLSNLRCLNLTHCKELKYLPELPTIQEKTIDGCDRRLYTFDCPKLSDLEHCYSIVFSWMTKNLEVYLDPQMEIVIPGSEIPKWFSKQKAGTSISMDPSAVIDDPNWIGVSICVLFVTHEGPMNMDEINYPTNATLFYGVNNVINFGPKRYSGVSIIFKKDLVTVGLDYLLIVFYSRQEFIHLLNEHSDTMHDLQAVKFETMVKSLPGLRFMVKNCGYRLVFKEDLQQFNSNKFFNRNSSSRKRKLLTSE 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01143 1118 PRINTS Disease resistance protein signature 386 400 - -
Vimu5g01143 1118 PRINTS Disease resistance protein signature 217 232 - -
Vimu5g01143 1118 PRINTS Disease resistance protein signature 869 885 - -
Vimu5g01143 1118 PRINTS Disease resistance protein signature 293 307 - -
Vimu5g01143 1118 Pfam TIR domain 16 176 IPR000157 GO:0007165
Vimu5g01143 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 445 IPR027417 -
Vimu5g01143 1118 Gene3D - 351 435 IPR042197 -
Vimu5g01143 1118 Gene3D - 179 350 IPR027417 -
Vimu5g01143 1118 Gene3D - 14 178 IPR035897 -
Vimu5g01143 1118 Gene3D Ribonuclease Inhibitor 522 694 IPR032675 -
Vimu5g01143 1118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 738 IPR044974 GO:0006952
Vimu5g01143 1118 SMART till_3 16 156 IPR000157 GO:0007165
Vimu5g01143 1118 Pfam NB-ARC domain 203 423 IPR002182 GO:0043531
Vimu5g01143 1118 Pfam Leucine rich repeat 830 883 IPR001611 GO:0005515
Vimu5g01143 1118 Pfam C-JID domain 944 1094 IPR045344 -
Vimu5g01143 1118 SUPERFAMILY L domain-like 493 890 - -
Vimu5g01143 1118 Gene3D Ribonuclease Inhibitor 695 787 IPR032675 -
Vimu5g01143 1118 ProSiteProfiles TIR domain profile. 15 177 IPR000157 GO:0007165
Vimu5g01143 1118 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vimu5g01143 1118 Gene3D Ribonuclease Inhibitor 810 947 IPR032675 -
Vimu5g01143 1118 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Vimu5g01143 1118 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01143 Vimu-Chr5 19090028 19093880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01143 12 795 WRKY Transcription Factor Family AT4G12020 28.658 1.66e-73 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01143 - - vra:106780706 1809.65