Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01132 ATGGCGGAGAAGAGCTGGCCACCGAGCCACGCGCCGCCACCGGGACTGACGGACTGTTCGATAATGGCAACATTAATGGAAGGCACAGGAGAGTCCAGCAGACCCAGCACCGATGATGACAACATCAGTATCAGCATGCGTGACCATGTCGGTCATGTAGCGGCGCCGACGGACATAGACGCGCGAGGCGCGTGGAAGCGGGGAGTGGGGGTGACATGGGTGGGTTTGGTGGAGAAGAGGGATGAAGAGGGTGGAGAGAGAATGGAGGCAGAGAATAAGGAGGAAGAGGTGATTGTGGAAGCCATGAGTGAAAGTGTGAGATGTGATTTTGGTTTGGAGAGTGTGGTATTTATTAAGGAGAGTAGTATGCAAGAATGGAAAAGTTTCAAAGAAGGGTTCTTTGATGGTGTGCATGGAGGGCACGTGGAATTTTGTTGGAAATCAAAGCAATCACTGTTTGGTACTGTTGCTGCAGCTGTGACCACACTCATCTTATGTGGAAATATCTCCGTTACAAACTCCTCCATGCCATTCAAAACTCTCGAGTTTTCATTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGAGATACGTAACTGCGTTGAAACTTCGCCAAGACGTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAAAGTGAATGTTATGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAGAGAAGACAAAGCGAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCACAGAAGTGGCCAATCTATCTGGTTGGGATATTCGAAACAATCTTCCAAAGGATGAGCTAGTTGGGATAGAGCGTGGACTTGAAAAATTAGCAAATCTTGTATGTTACGAATCAGTTAATAGTGTTCAAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAGAATCTATCATCAATATGATTTTCATTGTTTTATTGATGATGTAAGTAAAATATATCGAGATTCAAGTTCACTAGGTGTACAAAAGCAGTTGATTTCTCAGTCTCTAAATGAGAAAAATCTAGAGATTTCAAACTTTTTTGAGGGAACATGTTTGATATGGTCTAGGCTCCACAATGTTAGGGCACTTGTAGTTCTGGACAATGTTGATGAAGTTGAACAACTAAAGATGTTTACAGGGAACAGAGACACTTTGTTGCGTGAATGCTTAGGTGGAGGGAGCATAATCATCATAGTTTCTAGAGATGAACATATATTGAGGACACATGGAGTAGATGACATTTATCAAGTCCCTCCATTGAATGACGAAAATGCTATGCAACTGTTATGTAGAAAGGCTTTCAAACTTAATTATATTTTGAGTGATTATGAAAGGCTGGCATTTGATGTACTATCTCATGCTCAGGGCCATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTGTCACAATGGAAAAGTGCAGTGGCCAGGCTAAAAGAAATAAAAAATAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAACTGGATGAAGAAGACAAAGAAATATTTTTGGATATTGCATGTGCCCTTTGCAAGCATGACGAGAAATATGTGAAGGAAGTTCTAAACTTTCGCGGATTTCATCCTGAATACAGTCTACAAGTTCTGCATGACAAATCACTAATAATAAAACAGGATGGACATATTTATATGCATAGGTTATTGAATGACTTGGGCAGGTGTATTGTCAAAGAAGAATCACATAAGGAACCCCTAAAGAGGAGTAGGTTGTGCGACTACCAAGATTTCCACAAAGCTATGTCAAACAATCAGGAAACTAAAATGCTTGAAGTCGTAGCTGTTAATTTACAATGCAGTTCTAAACCTCTGAGGGTAAATGGTCTATCGAAAATTAGACACCTTAAGTTCCTTAGATTTGAGACCGATCTTATAGTTCAGGACGTGAACTTTTCAGGAAGTCTTAGTCATCTTTCCAAGGAACTAGGATATCTTACTTGGCATAAATATCCTTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAAATTGAGATGCAGCAATATTCGACGATTATGGAGTGACACAAAGGTGCTACCTAATTTGAAGCGTTTGTATCTCTCTTACTCCAAAAAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGTGATAGATCTTAAAGGATGCATACAGCTCCGAAAACTCAGTCCATCAATTGGTTTTCTAAGGAAGCTTACTATTTTGAATTTGGAAAACTGTAAAAACTTAGTAAGCTTACCCAATAGCATATTGGGCCTGAATTCTCTTGAATATCTGAGTGTCTCTGGTTGTTCAAACCTGTTTAATAATGAGTTATTAGATCAAGCAAGGAACACGGAGCATTTGGAGGATGAAGAAAAGGCAGGATTAGTTATTTTCAACTGCCCAGAAATAGTTGAGAGGAAACGGTGCACAAGCATGAGTGTTTCATGGATGCTACAAATTGTTCAGGCGAAATGTCTTACATGTAATCTTTTCCGCCGAAGTGTTGAAAGTATTATCCCTGGAAGTGAAATACCAATGTGGTTCAACAATCAGCTTGTGAGCATGGACAATTCAATAATCATAGATGGCTCTCCTATTATAAGAAAAATTCCTGTAGATTTAAGAAGGGTTCTGTCTGTGGATCACTCAGATCATATGTGGCTATTTTATTTGAATCGTCAAGAGTTCCTCTGGAAAGAATGCAAATTTCGGGACACACTTGATACTTGTGACTTCAGATTGAAGTTTACAATACAGAAACCGATTCGTATTGAAAACATGGATACAGAATCAAAATATTTTGTGTTTGAAGTGAAAAAATACGGGTATCGATGGGTAAATGAGCAAGATCTACAACTATCAAACTTAGCAATGATTCATGGTTGA 2976 0.3978 MAEKSWPPSHAPPPGLTDCSIMATLMEGTGESSRPSTDDDNISISMRDHVGHVAAPTDIDARGAWKRGVGVTWVGLVEKRDEEGGERMEAENKEEEVIVEAMSESVRCDFGLESVVFIKESSMQEWKSFKEGFFDGVHGGHVEFCWKSKQSLFGTVAAAVTTLILCGNISVTNSSMPFKTLEFSLLSSQRTMLPPPEIRNCVETSPRRVIPVFYDVDPSVVRKQSECYEKAFAEHEKRFREDKAKMEEAERWREALTEVANLSGWDIRNNLPKDELVGIERGLEKLANLVCYESVNSVQVVGISGMGGIGKTTLARALYERIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQSLNEKNLEISNFFEGTCLIWSRLHNVRALVVLDNVDEVEQLKMFTGNRDTLLRECLGGGSIIIIVSRDEHILRTHGVDDIYQVPPLNDENAMQLLCRKAFKLNYILSDYERLAFDVLSHAQGHPLAIEVIGSSLFGRNVSQWKSAVARLKEIKNKNIMDVLRISFDQLDEEDKEIFLDIACALCKHDEKYVKEVLNFRGFHPEYSLQVLHDKSLIIKQDGHIYMHRLLNDLGRCIVKEESHKEPLKRSRLCDYQDFHKAMSNNQETKMLEVVAVNLQCSSKPLRVNGLSKIRHLKFLRFETDLIVQDVNFSGSLSHLSKELGYLTWHKYPFECLPQSFQPHKLVELKLRCSNIRRLWSDTKVLPNLKRLYLSYSKKLVEMPDVAEALNLEVIDLKGCIQLRKLSPSIGFLRKLTILNLENCKNLVSLPNSILGLNSLEYLSVSGCSNLFNNELLDQARNTEHLEDEEKAGLVIFNCPEIVERKRCTSMSVSWMLQIVQAKCLTCNLFRRSVESIIPGSEIPMWFNNQLVSMDNSIIIDGSPIIRKIPVDLRRVLSVDHSDHMWLFYLNRQEFLWKECKFRDTLDTCDFRLKFTIQKPIRIENMDTESKYFVFEVKKYGYRWVNEQDLQLSNLAMIHG 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01132 991 SUPERFAMILY Toll/Interleukin receptor TIR domain 198 265 IPR035897 -
Vimu5g01132 991 Gene3D - 439 523 IPR042197 -
Vimu5g01132 991 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 199 817 IPR044974 GO:0006952
Vimu5g01132 991 Pfam Leucine Rich Repeat 696 715 IPR011713 -
Vimu5g01132 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 533 IPR027417 -
Vimu5g01132 991 Gene3D - 268 432 IPR027417 -
Vimu5g01132 991 Pfam TIR domain 198 268 IPR000157 GO:0007165
Vimu5g01132 991 Pfam NB-ARC domain 296 509 IPR002182 GO:0043531
Vimu5g01132 991 SUPERFAMILY L domain-like 651 804 - -
Vimu5g01132 991 Gene3D Ribonuclease Inhibitor 591 821 IPR032675 -
Vimu5g01132 991 PRINTS Disease resistance protein signature 300 315 - -
Vimu5g01132 991 PRINTS Disease resistance protein signature 376 390 - -
Vimu5g01132 991 PRINTS Disease resistance protein signature 762 778 - -
Vimu5g01132 991 PRINTS Disease resistance protein signature 474 488 - -
Vimu5g01132 991 Gene3D - 192 260 IPR035897 -
Vimu5g01132 991 SUPERFAMILY "Winged helix" DNA-binding domain 510 594 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01132 Vimu-Chr5 18914782 18925116 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01132 620 802 WRKY Transcription Factor Family AT5G45050 31.217 3.29e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01132 - - vra:106780741 1138.64