Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01126 ATGAGCAAAGGATATCACTTTTCAGGAAGTCTCAGTCATCTTTCCAATGAACTAGGATATCTTACTTGGAAAAATTATCCTTTTGAGTGTTTACCTCAAAGTTTTCAGTCACACAAACTAGTTGAGTTAAAATTGAGAGAGAGCAGTATTGAACGACTATGGAGTGACACAAAGGTTCTACTTAATTTGAAGCGTTTGGATCTCTCTTACTCCAAAAAATTAGTTGAGATGCCAGAGGTTACAGAAGCCCTAAATCTTGAAGTGATAGATCTTGAAAGGTGCATACAACTCCGAAAACTCAGTCCTTCGATTGGTCTTCTGGGGAAGCTTACTATTTTGAATTTGAAATACTGCAAAAACTTAGTAAGCTTACCCAATAGCATGTTGGACCTGAATTCTCTTGAATATTTGAGTGTCTCTCGTTGTTCAAACCTGTTTAAGAATGAGTTATTAGGTCAAGCAAGGAACAATGAGCATTTGAAGAAGCTTTGTTTAGTTAAAGGTCGCATTAATTCCCACTCAACATCCCCTTCAATGAAAAAAATGCTTTTGTGGACATTAGATTTGTTGTATTCCAAAGCACAAAGAGAGTCAGTTAATTGTTTGTTATCCTCCTCTCCTACTCTCTCTTGTTTGCGTGAACTCGATCTAGGATTTTGTAACTTAGTTAAAAGCCCTGATGTCATTGGAAACTTACGTTGCTTAGAAAAGTTAAATTTGAAAGGAAACAATTTTGTTACATTGCCTAACCTCAAAGACCTTTTCAGACTCTATTATCTAAACTTGCAACATTGCAGGCTTCCGAAAAATTTTGAATCCTTTACTGATCGTATAATAGAGGATGATGAACATATGGCAGGATTAATTATTTTCAACTGCCCAGAAATAGTTGAGATGGAACGGTGCACTAACATGAGTGTTTCATGGATGCTACAAATTGTTCAGGCGAAATGTCTTACATCTAATTTATTCCGCCCAAGTGTTGAAAGTATTATCCCTGGAAGTGAAATACCAATGTGGTTCAACAATCAGCTTGTGAGCATAGACAATTCAATAATCATAGATGCCTCTCCTGTTATGCATGACAATAATTGGGTTGGTGTTGTATGCTGTGCAATATTCAATGCAGGTGTTTCA 1137 0.3641 MSKGYHFSGSLSHLSNELGYLTWKNYPFECLPQSFQSHKLVELKLRESSIERLWSDTKVLLNLKRLDLSYSKKLVEMPEVTEALNLEVIDLERCIQLRKLSPSIGLLGKLTILNLKYCKNLVSLPNSMLDLNSLEYLSVSRCSNLFKNELLGQARNNEHLKKLCLVKGRINSHSTSPSMKKMLLWTLDLLYSKAQRESVNCLLSSSPTLSCLRELDLGFCNLVKSPDVIGNLRCLEKLNLKGNNFVTLPNLKDLFRLYYLNLQHCRLPKNFESFTDRIIEDDEHMAGLIIFNCPEIVEMERCTNMSVSWMLQIVQAKCLTSNLFRPSVESIIPGSEIPMWFNNQLVSIDNSIIIDASPVMHDNNWVGVVCCAIFNAGVS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01126 379 ProSiteProfiles Leucine-rich repeat profile. 234 255 IPR001611 GO:0005515
Vimu5g01126 379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 148 IPR044974 GO:0006952
Vimu5g01126 379 Pfam Leucine Rich Repeat 39 58 IPR011713 -
Vimu5g01126 379 Gene3D Ribonuclease Inhibitor 183 277 IPR032675 -
Vimu5g01126 379 Gene3D Ribonuclease Inhibitor 4 161 IPR032675 -
Vimu5g01126 379 SUPERFAMILY L domain-like 15 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01126 Vimu-Chr5 18895527 18896824 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01126 4 250 WRKY Transcription Factor Family AT4G12020 36.576 8.50e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01126 - - vum:124845879 540.806