Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01122 CTAAGCAATCTGGTTGGTGGAACCTTTGGTCATAGAGAGTCAAATTTTATGTCTGAATTAGACGCTCAAATTCCCACTGCCTTCGATCCTTTTGCTGAGGCAAATGCTGATGACTCGGGTGCTGGGTCAAAGGAGTATGTGCATATTCGCGTACAGCAGCGAAATGGTAGAAAAAGCCTAACAACTGTTCAGGGATTGAAAAAAGAATTCAGCTATAACAAGATACTTAAAGACGTTAAGAAAGAGTTCTGTTGCAATGGCACCGTTGTTCAGGACCCAGAACTAGGACAGGTTATTCAACTTCAAGGTGATCAGCGGAAGAATGTTTCGACCTTTCTAGTCCAGGTAACTATATCTTCATCCGTGTTATGCAATGTGTTACTATAA 387 0.416 LSNLVGGTFGHRESNFMSELDAQIPTAFDPFAEANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQVTISSSVLCNVLL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01122 128 NCBIfam translation initiation factor SUI1 22 119 IPR005874 GO:0003743
Vimu5g01122 128 CDD eIF1_SUI1 45 121 IPR005874 GO:0003743
Vimu5g01122 128 Pfam Translation initiation factor SUI1 44 115 IPR001950 GO:0003743|GO:0006413
Vimu5g01122 128 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 22 118 - -
Vimu5g01122 128 SUPERFAMILY eIF1-like 16 118 IPR036877 GO:0003743|GO:0006413
Vimu5g01122 128 Gene3D - 6 125 - -
Vimu5g01122 128 ProSiteProfiles Translation initiation factor SUI1 family profile. 47 117 IPR001950 GO:0003743|GO:0006413
Vimu5g01122 128 FunFam Eukaryotic translation initiation factor SUI1 18 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01122 Vimu-Chr5 18866152 18867611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01122 17 118 Eukaryotic Initiation Factors Gene Family AT4G27130 88.235 1.49e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01122 K03113 - pcin:129312453 216.853