Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01120 ATGTCAGGTCTGAACAATCTGGTTGGTGGAACCTTTGGTCATAGAGAGTCAAGTTTTATGTCTGAATTAGACGCTCAAATTCCTACTGCCTTCGGAAAGAAGTCGTGGGAGAGTAAGGTCCTCTCAAAGGAACCTCAATTGTTTTATTCTGTTACTGTTTTCTACCACATTGGCAGAAACATTCTTGTTGGTAATATTCAAGATTTGCCTCAATTTATAGATCCTTTTGCTGAGGCAAATGCTGATGACTCGGGTGCTGGGTCAAAGGAGTATGTGCATATTCGCGTACAACAGCGAAATGGTAGGAAAAGCCTGACAACTGTTCAGGGATTGAAAAAGGAATTCAGCTATAACAAGATACTTAAAGACGTGAAGAAAGAGTTCTGTTGCAATGGCACAGTTGTTCAGGACCCAGAACTAGGACAGGTTATTCAACTTCAAGGTGATCAGCGGAAGAATGTTTCTGCCTTCCTAGTCCAGGCTGGTATAGTGAAGAAGGAGCATATCAAGATTCATGGTTTCTGA 525 0.4171 MSGLNNLVGGTFGHRESSFMSELDAQIPTAFGKKSWESKVLSKEPQLFYSVTVFYHIGRNILVGNIQDLPQFIDPFAEANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSAFLVQAGIVKKEHIKIHGF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01120 174 Pfam Translation initiation factor SUI1 89 163 IPR001950 GO:0003743|GO:0006413
Vimu5g01120 174 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 69 174 - -
Vimu5g01120 174 SUPERFAMILY eIF1-like 70 174 IPR036877 GO:0003743|GO:0006413
Vimu5g01120 174 NCBIfam translation initiation factor SUI1 71 174 IPR005874 GO:0003743
Vimu5g01120 174 FunFam Eukaryotic translation initiation factor SUI1 64 174 - -
Vimu5g01120 174 CDD eIF1_SUI1 90 173 IPR005874 GO:0003743
Vimu5g01120 174 ProSiteProfiles Translation initiation factor SUI1 family profile. 92 162 IPR001950 GO:0003743|GO:0006413
Vimu5g01120 174 Gene3D - 54 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01120 Vimu-Chr5 18831310 18833536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01120 20 174 Eukaryotic Initiation Factors Gene Family AT4G27130 64.516 2.05e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01120 K03113 - pcin:129312453 223.016