Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01115 ATGTGTGCCTCTGCTCCCTTTCTTTTGTTGGCTCCTTTAGGAAGCCCATTCTCTGCTGGGTGGCATTCCATGAATTTGGGATTTATTTCCCCCATTTCAATTTATTGTGATGAAATGAAGCAATATAGAATTCAACCTACAAAGCAAGTTTTTATGGCCCTTGTTCATTCATACGCAGCTTGTGGAAATTTGGAGAAGGCAAAACAGGAAGACGAAGAAGATGAGGAAATTAACAATCTCTTGGATCTGGAGAATATGGGTAAGGGAATGGGAGAAACGGAGCTGAAGCTGAGCACACATCAACCGCCTTTGCTGATTCAGTACTGTCTCTTTCACTTGGGTCGCACAATTAAGGGCACTCTTTTGGTTAACAGAAAGCTTCTTCCTAGGACATTACATGTTAGGCATTCAATGTTTAAAGTTGAGAAAGACCTTAGGACTCGCTTAGTGGCAGATGAAATTGCTGGAGCCATGGAAAGGCTAACTGGATGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTAGTGAAATATTTGGAAGTCTTTGTCGACTAAAAGAGCATAAGTTGTATTTCATGTTGCAGGTACTTTTGGATCCAGACATATCAGACAAGAACTTAAATGAAATCAAGAGTGTACTTGTCGTAAATCTTGTATCACATGGGCAATTGTCCGAGGGTCTCCTTATCTATGAACAGATTAAGAAAGGTGGACATAAGTTGGAGCCAAAAGCAATTACATGTCTAATTGAAGAGTTGACTCAACACAATGGGGAGTTGGATGGATTGCTACTTCTACTCAACGAAATGAGTGATCTAGACTATTGGGTTGATGGCTGCTTCAAGGTCATCTTGTACTGTGCACGGAACAATAATTTGAGTTCTGCTATTCTTTTGCTCAAACAACTCAAGGATACGTTTGAAAATGATGAAATGGTACTGGAAGCCCTTTTTGACGGAGTATTTTCTGCAATTGCAGAATCAGAGGCCACTCATTTACAGTTTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAACTGGGCCTTAGGCCGTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAACAATGCTCGATTGATTTGGAGGGAGTACGAGATTGCTGGGTTTCCTTACAATGTATTAAGTTACTTGCGAATGTATCAAACACTTTTGGCAGCTGGAGATGGTAGATCTGCATCTTTTATCCTTAAGAAAATTCCACGAGACGATGCAGAGGTTTGTGCTGTCATCATGGCATGTGAGGAAACATATATTGCTCTTAATTCTGTAGGAGAGAAGAAAGAGCAAGGAAAACGTAAAGGAAGAAAGAGCAAAAGAAAGAGCAAGACCTGA 1377 0.4096 MCASAPFLLLAPLGSPFSAGWHSMNLGFISPISIYCDEMKQYRIQPTKQVFMALVHSYAACGNLEKAKQEDEEDEEINNLLDLENMGKGMGETELKLSTHQPPLLIQYCLFHLGRTIKGTLLVNRKLLPRTLHVRHSMFKVEKDLRTRLVADEIAGAMERLTGWKRDEVIGKLLPSEIFGSLCRLKEHKLYFMLQVLLDPDISDKNLNEIKSVLVVNLVSHGQLSEGLLIYEQIKKGGHKLEPKAITCLIEELTQHNGELDGLLLLLNEMSDLDYWVDGCFKVILYCARNNNLSSAILLLKQLKDTFENDEMVLEALFDGVFSAIAESEATHLQFGLDLLWAIKDELGLRPSRQCLDFLLSACANAGDLNNARLIWREYEIAGFPYNVLSYLRMYQTLLAAGDGRSASFILKKIPRDDAEVCAVIMACEETYIALNSVGEKKEQGKRKGRKSKRKSKT 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01115 458 Coils Coil 66 86 - -
Vimu5g01115 458 PANTHER OS02G0132600 PROTEIN 32 73 - -
Vimu5g01115 458 Gene3D Tetratricopeptide repeat domain 211 458 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01115 Vimu-Chr5 18768400 18777947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01115 157 186 Histidine Kinase Gene Family AT4G16250 76.667 9.90e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01115 - - vum:124840759 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01115 5 18768400 18777947 Vimu5g01115 5 18768400 18777947 ECH