Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01114 ATGAAATTTCGTGTCGAGGAATTAGCAAAACTCTTATATTCGGAGTCAAGTAATGATGTTAGAGTTTTTGGAATCACTGGAATGGATGGAATAGGAAAGACAACTCTTGTTCGTGCTTTATTCGAAGGAATCTCTCATCAATATGATTTTACTTGTTATATTGATGATGTGAACCAGATTTATGGAGATTCTAGTACATTAGGTGTACAAAAGCAATTGCTTTCTCATTCTCTAAATGAAAAATGTGAAGAGATTTGCAATGTTTCTCAGGGAACTTATTTGATATGGAAAAGGCTACAAGGTAAAAAGGCACTTATAGTTCTTGATAATGTTGATGAAGTTGAACAGCTAAAGATTTTTACAGGGAATCGAGACACTATGTTACGTGATTGCTTAGGTAGAGGGAGCATAATCATGATAATTTCCAGAGATGAACAAATATTGAGGATACATGGAGTAGACGAGGTTCACCAAGTACAACCACTAGAGAATACTGAGGCCGTTCAATTATTTTGTAGACATGCTTTCAAAGCTAATGTTATTATGAATGGTTTTGAAAAGATGACAAATGAGGTACTATGGCATGCTCAGGGTCATCCTTTTGCAATTGAAATATTGGGTTCATCGTTATTTGGTCTAAGTGTGTCACAATGGAGAAGTGCATTAGCTATGCTAAGAGAAAATAAAAGTAAAAAGATTATGGATTTGCTTAGAATAAGTTTTGAAGCGTTGGATTCTACAAACAAGCAAATATTTCTTGACATATCTTGCTTTCTCCATGGCTATGAAGTGGAACATGTAGTAGAAATTCTAAATTTTCGTGGATTTTATCCTGAATATGGCTTGCAAGTTCTGATAAATAAATCACTCTTGATCGTTGAGGACGGGAGAATTAAAATGCATCGCTTGTTGATGGATTTGGGGCAATTTATTGTTCGTGAAATATCACCTAAAGAACCAAGAAATTGGAGCAGAGTGTGGAGCTACAAGGATCTCCAAACAATACTGTCAAATAACATGGTACTATAG 1029 0.3499 MKFRVEELAKLLYSESSNDVRVFGITGMDGIGKTTLVRALFEGISHQYDFTCYIDDVNQIYGDSSTLGVQKQLLSHSLNEKCEEICNVSQGTYLIWKRLQGKKALIVLDNVDEVEQLKIFTGNRDTMLRDCLGRGSIIMIISRDEQILRIHGVDEVHQVQPLENTEAVQLFCRHAFKANVIMNGFEKMTNEVLWHAQGHPFAIEILGSSLFGLSVSQWRSALAMLRENKSKKIMDLLRISFEALDSTNKQIFLDISCFLHGYEVEHVVEILNFRGFYPEYGLQVLINKSLLIVEDGRIKMHRLLMDLGQFIVREISPKEPRNWSRVWSYKDLQTILSNNMVL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01114 342 SUPERFAMILY "Winged helix" DNA-binding domain 231 336 IPR036390 -
Vimu5g01114 342 Gene3D - 162 245 IPR042197 -
Vimu5g01114 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 255 IPR027417 -
Vimu5g01114 342 Pfam NB-ARC domain 4 231 IPR002182 GO:0043531
Vimu5g01114 342 Gene3D - 1 156 IPR027417 -
Vimu5g01114 342 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 333 IPR044974 GO:0006952
Vimu5g01114 342 PRINTS Disease resistance protein signature 22 37 - -
Vimu5g01114 342 PRINTS Disease resistance protein signature 98 112 - -
Vimu5g01114 342 PRINTS Disease resistance protein signature 196 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01114 Vimu-Chr5 18739863 18740891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01114 19 338 WRKY Transcription Factor Family AT5G45050 32.609 1.47e-48 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01114 - - vra:106756186 655.595