Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01113 ATGAGGCATCTTAAGTTGCTCAAGTTGAATTATGTGGAATTTTCCGGAAGCCTGGACTATCTTCCTAGTGAGTTAGGATATCTATGTTGGCATGGATATCCATTTAAGTCTTTGCCACCTCGTTTTCTACCATACAAGCTTGTTTCGTTGTCCCTGGCTAATAGCAAAATCAAACAACTATGGGAAGATACAAAGCCTTTACACAATTTGAAGCGTTTGGATCTCTCTTCATCAGAAGACCTAATCAAGGTGCCAGATTTAGGGGAGGCCATAAATCTTGAGTGGCTATCTCTGAAAAGTTGTACAACAATAAGGGAGATCCATCCATCCATTGGTCTTCTAAGAAAACTTTCTTATGTGACTTTGGAAGGCTGCAAAGGTCTTATAAAGTTGCCACATTTTGAGGAGACCCAAAATCTTGAAATACTAGATCTTGAGAGATGTATAAAACTGGAGAAGATCCATCCATCCATTGGTCTTATAAGAAAACTGAAATTTTTGAACTTAAAAAACTGCGAAAGTCTTACCATGTTACCACATTTTAGAGAGGACCTAAATCTTGAAATTCTAAATCTCGAAGGATGTAGGAAGCTCGGGCAGATCAATCCCTCCATTCATCATCTAAAAAAGCTTACTGTTTTGAATTTGAAAGGCTGCAAAAGGCTAGTAAGCCTGCCCAACAGCATATTATGCCTCAATTCTCTCAGTTATCTGAATCTCTCGTCCTGTTCAAATCTGTCTTATATCCAGTTATTAGAAAAACCAAGGGATGAAGGTCATTCGAAGAGGCCTTGTATAGGTGAAGCTTCTGTAAGATCATCCATCATGAAAAGGTGGTTTAAGTCGCCTTTACACTTGTTCAATTCAAGAACACATAAACATTCATTTAGCCACTTGTTGCCTTCTCCCAATTTCTCATGCATTCGTGAACTTGATCTAAGTTTCTGCGCTTTACTTCAAATCCCTGATGTTATTGGAAAATTGCATAGCTTAGAAAGGCTAAATTTAAGTGGAAACAGTTTTTGCAAACTACCCAACCTCAAGGAGCTTTCCAAACTGTATCGTTTAGTCTTAAGGCATTGCAGGCAACTGAAATATTTGCCTGAGCTACCTTCACAAACTCACTTGCCATCAGTAATTTATGAACGGCCATGGCCAACAACAGAATCTCCAGTATGGGCTAACGCACCACAAAAACCACTTCTACATGTTATAAACTCAGGTTTAGAAGTTTTGAACTGCCCAGAGTTAGTTGAGATTGAAAGGGAACGCTGTACGAGAATGACTGTTTCATGGATGATACAAATACTTCAGGCACAACGCCGCATAGATCCGTTGTCCATTCCAATGAACCCACTTTTTTCAAGTGTTATACCTGGAAGTGAAATACCAAGGCTGTTCAACCATCAGGAGTATAGCACGTTAACAAGGATTGATGAGTCTCCCTTTGGGCATGACTATGTGGCTGCTGTGTTTTGTGTAATATTCGAAGCTCGGTTCAAAAGGGGGATTGTGTCATCAATTTGTCCTCCGAAAGCAAAAGGAAAGTTTAGTGACAGTAAGATATCAATGGTTTTTGATTCTGATCTAGCCATCGCAGACTATGTTTCAGATTACCTGTGGATATTCTTTTTGAATAAATATGAATTCATTAAATATCAGTACACACCTTTGTATGATGAAATAGTAGACTTAGTCGGGAATGATCATTATGATATAGATGTGAAGAAATGCGGGTATCGTCTGATATATGATCTGGATCTAGAACTATCAAACTTAGCAATGATGCACGGTGGAAATTCGCCGGCCTTGAACAACGACCTTTCGGCAATTGAAGATAACAAGTAG 1848 0.3896 MRHLKLLKLNYVEFSGSLDYLPSELGYLCWHGYPFKSLPPRFLPYKLVSLSLANSKIKQLWEDTKPLHNLKRLDLSSSEDLIKVPDLGEAINLEWLSLKSCTTIREIHPSIGLLRKLSYVTLEGCKGLIKLPHFEETQNLEILDLERCIKLEKIHPSIGLIRKLKFLNLKNCESLTMLPHFREDLNLEILNLEGCRKLGQINPSIHHLKKLTVLNLKGCKRLVSLPNSILCLNSLSYLNLSSCSNLSYIQLLEKPRDEGHSKRPCIGEASVRSSIMKRWFKSPLHLFNSRTHKHSFSHLLPSPNFSCIRELDLSFCALLQIPDVIGKLHSLERLNLSGNSFCKLPNLKELSKLYRLVLRHCRQLKYLPELPSQTHLPSVIYERPWPTTESPVWANAPQKPLLHVINSGLEVLNCPELVEIERERCTRMTVSWMIQILQAQRRIDPLSIPMNPLFSSVIPGSEIPRLFNHQEYSTLTRIDESPFGHDYVAAVFCVIFEARFKRGIVSSICPPKAKGKFSDSKISMVFDSDLAIADYVSDYLWIFFLNKYEFIKYQYTPLYDEIVDLVGNDHYDIDVKKCGYRLIYDLDLELSNLAMMHGGNSPALNNDLSAIEDNK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01113 615 SUPERFAMILY L domain-like 298 376 - -
Vimu5g01113 615 SUPERFAMILY L domain-like 7 251 - -
Vimu5g01113 615 Gene3D Ribonuclease Inhibitor 1 130 IPR032675 -
Vimu5g01113 615 ProSiteProfiles Leucine-rich repeat profile. 330 351 IPR001611 GO:0005515
Vimu5g01113 615 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Vimu5g01113 615 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 2 166 - -
Vimu5g01113 615 Gene3D Ribonuclease Inhibitor 133 258 IPR032675 -
Vimu5g01113 615 Gene3D Ribonuclease Inhibitor 278 435 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01113 Vimu-Chr5 18731112 18733325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01113 161 334 WRKY Transcription Factor Family AT4G12020 33.161 4.08e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01113 - - vra:106756186 1179.85