Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01102 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTATGGCTTGATAGATGATATTCCCGTCGCCGATGCCTCCTTCGCCGTTCCTTCCTCCGGCTTCACATGGCCTCCTAATGCCTTGAATGCCACTTCCAATGTCGGTGTTGAAGTTGACGGTTCACTGGTGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAGAGGGTTAGATCTGAGACATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACGAAAACTGATAAGGCTGCTATCCTGATTGATGCTGTCCGTATGGTGACACACTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGGGATGAGAAACAGGTGCTCAAGGCAGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAGTTTCATGCCTCCCCCTGCTGCTATCCCTGCTGCATTTGCGGCGCAAGGCCAAGCCCACGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCGCCTGCTGCAGTGGATACCTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4895 MVSRENTNWLFDYGLIDDIPVADASFAVPSSGFTWPPNALNATSNVGVEVDGSLVDSDGLKESGSKKRVRSETCAASSSKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTHLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQVLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01102 236 FunFam Transcription factor bHLH34 66 124 - -
Vimu5g01102 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Vimu5g01102 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Vimu5g01102 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Vimu5g01102 236 CDD bHLH_AtILR3_like 80 155 - -
Vimu5g01102 236 SMART finulus 81 132 IPR011598 GO:0046983
Vimu5g01102 236 Coils Coil 123 178 - -
Vimu5g01102 236 Gene3D - 78 155 IPR036638 GO:0046983
Vimu5g01102 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01102 Vimu-Chr5 18597913 18601262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01102 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.417 6.06e-112 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g01102 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01102 - - gmx:100788858 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01102 5 18597913 18601262 Vimu5g01102 5 18597913 18601262 ECH
Vimu4g01242 4 11540006 11541825 Vimu5g01102 5 18597913 18601262 PCT