Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01087 ATGGGAATTAAAAAACATATGGTTAACGTAAAGGCTAGCTTAGGTGTTCTTGTGGTTCTTCTTCTTGTAGCAGCAGTCAGTCCTTTGGAGAAGAAGGAAACAGTAGATGATTTTGTTAGAAAGTTACTTGATCCAGCATCTGGGTTGTTCGATGAGCACACGGCAAAAGTCTTATGGAAATATTGCAGGGAAGGTTTATTTCATTTAGTGAAAGATGTTGAGAATCATGATTTGTGTCTTTCATGGGAATTATCTGGCAGCACCAATATAATCAGCTCAGAGATTCAACCATTAGCACGTGAAGAGACCAAAAAATTTATCAATGCTTACTGTTCTCAATTAAAGGACAACATTCTTCACTGTTTGAGAAAAGATAATCCCCCATTACCTGATTCAGGAAAAGAGGATGATTCCAATATTTGGCATGTCACTTATATGGGACCACTTTTTTCCAGATCCAGTGCTCCTATGAGAAATTTTGGTCGTATTTTGCTCCAGCACATATCACAACCACCTAGTCCAGGCCCTGCACCTAGTTTAGCACCATCTTCTGAACCCAGTCCAGCACCATCTTCTGAACCCAGTCCAGCACCATCATCTGAACCCAGTCCAGTACCATCACCTCATTCTCCAGTACATCATCTTCCTAGACCACTGCAACCTTCTGCACCAACACCTTTTTTTCCAAAATTGACACCACCAGCAGCTTCAGATATTTCTGCTCCTCCATCTCCGGAAATTGACAAACAGGAAGATAGTGACAGTAATAAAAAAACAGTTGTTCTTGCAGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTGGAGGCGGCGTCAGAGGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTTTTCTTTTGGGAATTCAATGAAAGGGGAGAAACCTGGGTTTCAGTCAGCTAGTAATAGTTTAGTAGACAATAAGTATACTGTGCCAGAAAGTCAATCAATAGGAGTTCATAATGCTGCTACAGGGTCGCCATTTGAACTGAAACCTCCTCCCGGTAGGATGGGAATCATTCCTTCTGGAATGCCTCCCTTAAAGCCTCCACCAGGAAGGTTAAATCCTCCTCCAGGCAGATTAAACCCGCTTCCTCCTGAGCCACCTTCATTTAGGCCTTTGGATGCTGCAGCTCCTCCAGCATCTACCACTACTGTTGCTGCAGTTCCTCCTCCTGCCCCTCAAAAGCCTGCTAGCATTCCACCTACTCGACCACCTCAACCACCAATGGGTGCCAAACCTAGCCCACCTCCACCAGCACTAGCTGGTTCCAGACCAGGTCCTCCTCCACCACCTCCAGCACTAGCTGTTTCCAGACCTGGTCCTCCTCCTCCACCACCCCCAGCACCAGCTGGTATTAAACCTGGTCCTCCTCCACCACCACCCCTAGCACCAGGTGGTTCCAAACCTGGTCCTCGGCCACCACCACCACCTCCTGTTAATGGTGTAGCTCCTCCTCGACCTCCTCCATTTGGCTCAAAGGTGCCCCAGCCTTTGGCTAGTGGATCAAAAGCTACAGTTGCAAGTGAAGTTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCGTTCCAATTTAATGAGGAAATGATAGAGACGCTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTCAAAGACAGAAAGAGTCTTCCTCTCTAGACCCTTCACCTCAGTTTGTCCAGATTATTGACAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTCATGATGCGCTTTATGAGGGACATGAGCTACCCCCAGAGTTCCTTCAAACTTTGCTAAAGATGGCACCAACATCAGATGAAGAACTTAAGCTCAGACGTTTTGATGGTGATCTATCTCAACTTGGTCCTGCTGACAGTTTCCTCAAAACCCTGGTTGACATTCCATTTGCATTCAAAAGAATGGAAGCTCTGCTTTTCATGGGCTCATTTAAAGAGGAGCTTGGAACTACTATGGAGTCTTTTTCCATTTTGGAGGTTGCTTGTAAGGAACTAAGAAGTAGCCGGCTATTTCTGAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAATCGAATGAATGATGGAACTTTCCGTGGTGGTGCTCAAGCATTTAAACTTGATACACTTCTGAAATTGTCTGATGTAAAAGGAACAGATGGGAAGACTACACTCTTACACTTTGTTGTTCTAGAGATTATCCGTTCTGAGGGCATAAAAGCCGTCAGAAAGTCCAAAGATAGCCAGAGTTTGTCTATTATTAAATCAGATGACCTTCAGGATAGTATTCAAGAAACAGAAGATCACTACCATGAAATTGGCCTTCAGGTGGTTTCACACTTGAGCAGTGAACTTGAGAATGTGAAAAAAGCAGCAGTTATAGACGCAGACAGCTTAACAGGAACCACTGTGAAACTTGGCGAAGGTCTCGTAAACACACGAGACTTGATAAATAAAAACATGAAGAATGTGAAGGAAGACAGGGGGTTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTAAGAAACTGCTGGAAGAGGAGAAGAAGATCATGGCTTTGGTGAAGAACACTGGTGATTACTTTCATGGGAATGCTGGGAAGAATGAAGGCTTAAGGCTGTTCATAGTAGTACGGGACTTCTTACTAATGCTGGATAAAATATGCAAGGAGTTGATAGACACACAGAAGAAGCAAGCAAAAACGGTAAAACAAGAGAATCCCCGGGAACAGTCGTCCTCCGAAACACGGCCACCACCTGATCTTCGACAGCGGCTCTTCCCAGCAATTGCTGAAAGGAGGATGATTGACATTAGTTCAGATGATGAGAGTCCATAG 3012 0.4412 MGIKKHMVNVKASLGVLVVLLLVAAVSPLEKKETVDDFVRKLLDPASGLFDEHTAKVLWKYCREGLFHLVKDVENHDLCLSWELSGSTNIISSEIQPLAREETKKFINAYCSQLKDNILHCLRKDNPPLPDSGKEDDSNIWHVTYMGPLFSRSSAPMRNFGRILLQHISQPPSPGPAPSLAPSSEPSPAPSSEPSPAPSSEPSPVPSPHSPVHHLPRPLQPSAPTPFFPKLTPPAASDISAPPSPEIDKQEDSDSNKKTVVLAVVITALVTFIAAALLFLCWRRRQRTGHVRLNDDRPLLSLSMSDYSVGPSSFSFGNSMKGEKPGFQSASNSLVDNKYTVPESQSIGVHNAATGSPFELKPPPGRMGIIPSGMPPLKPPPGRLNPPPGRLNPLPPEPPSFRPLDAAAPPASTTTVAAVPPPAPQKPASIPPTRPPQPPMGAKPSPPPPALAGSRPGPPPPPPALAVSRPGPPPPPPPAPAGIKPGPPPPPPLAPGGSKPGPRPPPPPPVNGVAPPRPPPFGSKVPQPLASGSKATVASEVDAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESSSLDPSPQFVQIIDKKKAQNLLILLRALNVTMEEVHDALYEGHELPPEFLQTLLKMAPTSDEELKLRRFDGDLSQLGPADSFLKTLVDIPFAFKRMEALLFMGSFKEELGTTMESFSILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKSKDSQSLSIIKSDDLQDSIQETEDHYHEIGLQVVSHLSSELENVKKAAVIDADSLTGTTVKLGEGLVNTRDLINKNMKNVKEDRGFCETVKSFVQNAEADVKKLLEEEKKIMALVKNTGDYFHGNAGKNEGLRLFIVVRDFLLMLDKICKELIDTQKKQAKTVKQENPREQSSSETRPPPDLRQRLFPAIAERRMIDISSDDESP 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01087 1003 SUPERFAMILY Formin homology 2 domain (FH2 domain) 608 972 - -
Vimu5g01087 1003 SMART it6_source 538 958 IPR015425 -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 348 537 - -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 415 525 - -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 167 256 - -
Vimu5g01087 1003 Pfam Formin Homology 2 Domain 540 943 IPR015425 -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 171 240 - -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 958 985 - -
Vimu5g01087 1003 PANTHER FORMIN-RELATED 167 990 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu5g01087 1003 ProSiteProfiles Formin homology-2 (FH2) domain profile. 538 969 IPR015425 -
Vimu5g01087 1003 Coils Coil 892 912 - -
Vimu5g01087 1003 Gene3D Formin, FH2 domain 543 976 IPR042201 -
Vimu5g01087 1003 MobiDBLite consensus disorder prediction 368 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01087 Vimu-Chr5 18068939 18074562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01087 501 993 FH2 protein (formin) Gene Family AT5G54650 61.044 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01087 - - gmx:100793413 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01087 5 18068939 18074562 Vimu5g01087 5 18068939 18074562 ECH