Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01083 ATGAGAGAGGAGTCAATAGGGATAGTTATCGGGGTTTCCATAGGGGTGGTTATTGGACTGGTTTTGGCAATTTTTGCATTCTTCTGCCACAGGTATCATCGGAAGCGTTCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATTCCAATCCGCGCACATGGTGCTGATTCTTGCACCATTCTATCAGACTCAACCTTAGGTCCAGAGTCACCCATAAAGTCTGGAAGGTATGGCCTTCCCTTCTGGCTTGAAGGGTTTAAGAAGAGTAGTAACATGGTCCCAGCATCTGGCCTACCTGAATATGCATACAAGGATTTGCAGAAAGCAACACATAATTTTACAACAGTCATAGGACAAGGTGCATTTGGTCCGGTTTATAAAGCTCAGATGTCTACTGGTGAGATTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGGTTACACCACAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAATGGTAGCTTGGCATCCCACTTGTATGGTAGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTCAACATAGCTTTAGATGTGGCAAAAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCCCCTGTAATCCATAGAGACATCAAATCTTCCAATATTCTGTTGGATCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCTATTAGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGCTATTTGAAATTATAGCTGGCAGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAGCTTGCATCAATGAACATAGAGGGAAAAGTTGGGTGGGAAGAGATTGTGGATTCTCACCTTCAAGGAAACTTTCATGTGAAGGAACTGAATGAAGTTGCAGCAATAGCTTACAAATGCATCAACCGTGCACCAAATAAACGTCCTTCTATGAGGGACATTGTGCAAGTGTTAACAAGGATCCTTAAATCAAGGCACCATGGGAATCATCACAAAGATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATCCTGACCAGCTAGAGACCATGATTTCAGTCACTGACCACAGGAGAGAAGAATCTAAGGATAATCCTGCGACAGAGGTGTACGATGAGTAG 1296 0.4298 MREESIGIVIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATIPIRAHGADSCTILSDSTLGPESPIKSGRYGLPFWLEGFKKSSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGEIVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSNGSLASHLYGSDVNEALCWDLRVNIALDVAKGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELASMNIEGKVGWEEIVDSHLQGNFHVKELNEVAAIAYKCINRAPNKRPSMRDIVQVLTRILKSRHHGNHHKDSLSATDEVFIDPDQLETMISVTDHRREESKDNPATEVYDE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01083 431 SUPERFAMILY Protein kinase-like (PK-like) 101 389 IPR011009 -
Vimu5g01083 431 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Vimu5g01083 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 397 - -
Vimu5g01083 431 SMART serkin_6 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01083 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vimu5g01083 431 ProSiteProfiles Protein kinase domain profile. 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01083 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Vimu5g01083 431 MobiDBLite consensus disorder prediction 411 431 - -
Vimu5g01083 431 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Vimu5g01083 431 PANTHER OS01G0750732 PROTEIN 6 390 - -
Vimu5g01083 431 Pfam Protein tyrosine and serine/threonine kinase 115 376 IPR001245 GO:0004672|GO:0006468
Vimu5g01083 431 CDD STKc_IRAK 119 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01083 Vimu-Chr5 18013643 18017081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01083 103 402 Glycoside Hydrolase AT3G07070 42.812 8.24e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vimu5g01083 PK_Tyr_Ser-Thr 2.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01083 - - gmx:100785634 762.296