Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01082 ATGGACTTGAATGAGTTTTCAAGTGTCGGTGTGACTAGTTCGGCAGGAATTCCTTGCACATCATCTTATAATCCTATTTCAGCAATACCCAACAGGTTGCTTGGATCCTTGAAACAAAACATAGAACACTCTCCTAATTCGGCCCTTTCTACCCATTTTGATTCTGATACCCTTTCTTCTGCGATAAGTGACGGCCAAGAACAGCATACCGCTGGGGAAATTCACTCTGGTGTAAACCCTTTGAAGGAAACCAATCATTATTTGTATAGGCCAGTCTCATCTGTGGACCATCTCCAAGACGGTAAGCATCTAACTACTAGATGTTTTTTTCCACAGGATATAGGTTATTATGATCATGAAACCAGGTATGCATTGCTGGAATTAGAAACTGCTTTGATGGCACCTGATGGTGATGATCAAGTCACCACATCAAGCACTTCTTTGGGTGTTAGCAGAAGGCCTACAACATCTGCCCAGAGAAATAGGTCCTGGAGCCATGAGGGGCAGCCAAGTGATGTTGCACGAGTAGGTAAGCGTCACAAATCAACTGAGGAAGTATCACTACAAGGATTCCCATCAACCAATTTGAAAGAATTGCTGATTGTATCAGCCAAAGCCTTGTCTGAAAACAACATGAAAGATTTTGATCGACTGATAGAGAAGGCTAGAAGTGTTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTTGGTGCTTATTTGGTGGAAGGACTTGTTGCAAGGAAGGGGGCATCAGGGAATAACATCTACCGTGCACTTAGATGCAGAGAACCTGAAGGAAAAGACTTGCTCTCTTACATTCAGCTACTGTATGAAATATGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGCGCCATTGCTGAAGCTTGTAGAGATGAGGACCGCATTCATATCATAGACTTTCAGATTGGTCAGGGAATTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGTGGAGCTCCTCATGTGCGGATCACAGGGATTGATGACCCTCTTTCTAAATATGTTCGTGGTGATGGATTAGAAGCCGTTGGAAAAAGGTTGGCTGAAATATCTCAGACATTTAACATCCCAGTAGAGTTCCACAGTGTGCCTGTTTTAGCTCCATATGTGACAAAAGACATGCTTGAGATTAGGCCTGGTGAGGCTTTGGCTGTGAATTTCCCGTTGCAACTCCATCACACGGCTGATGAGAGTGTGGATATGAATAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACGTTGATTGAGCAAGAGTCAAACACTAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTTGCAATTTTTGAGTCCATTGATGTGTCTCTTGCAAGAAAGAGCAAGGATCGGATTAATGTGGAACAGCATTGTCTGGCACGGGATATTGTCAATATTGTTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAACTATTAGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGATTTTCTCAATATCCTTTGAGTTCATACGTTAATTCTGTCATAAGGAGCCTGCTTAGGTGCTATTCAGAACATTATAATCTTGTGGAGAAGGATGGGGCCATGTTGTTAGGATGGAAGGACAGAAATTTGATTTCAGCTTCAGCATGGCATTGA 1701 0.4292 MDLNEFSSVGVTSSAGIPCTSSYNPISAIPNRLLGSLKQNIEHSPNSALSTHFDSDTLSSAISDGQEQHTAGEIHSGVNPLKETNHYLYRPVSSVDHLQDGKHLTTRCFFPQDIGYYDHETRYALLELETALMAPDGDDQVTTSSTSLGVSRRPTTSAQRNRSWSHEGQPSDVARVGKRHKSTEEVSLQGFPSTNLKELLIVSAKALSENNMKDFDRLIEKARSVVSITGEPIQRLGAYLVEGLVARKGASGNNIYRALRCREPEGKDLLSYIQLLYEICPYLKFGYMAANGAIAEACRDEDRIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAEISQTFNIPVEFHSVPVLAPYVTKDMLEIRPGEALAVNFPLQLHHTADESVDMNNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYFAIFESIDVSLARKSKDRINVEQHCLARDIVNIVACEGKERVERHELLGKWKSRFTMAGFSQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKDRNLISASAWH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01082 566 MobiDBLite consensus disorder prediction 57 73 - -
Vimu5g01082 566 MobiDBLite consensus disorder prediction 57 78 - -
Vimu5g01082 566 ProSiteProfiles GRAS family profile. 187 566 IPR005202 -
Vimu5g01082 566 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 159 562 IPR005202 -
Vimu5g01082 566 MobiDBLite consensus disorder prediction 136 179 - -
Vimu5g01082 566 MobiDBLite consensus disorder prediction 137 168 - -
Vimu5g01082 566 Pfam GRAS domain family 196 565 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01082 Vimu-Chr5 17917137 17921234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01082 119 565 GRAS Transcription Factor Family AT5G48150 56.250 2.93e-176 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g01082 GRAS 6.7e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01082 - - gmx:100775665 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01082 5 17917137 17921234 Vimu5g01082 5 17917137 17921234 ECH