Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01080 ATGTGCAACACAATTTTTAGGCTTCCTTTGACCTATGGGGTTGGCCATACTGTACGATGTGGATTAGGGTTCGAGTCTTCGTTCTCCCGTCTCACAGCACCCTCTGATTACTCCCAGAGCCTCCGCGTCACCCTTCTCTTCTTATCAACGCCAAGGCAAGTCAATTTACTATCCCTTTCTCTCTCTATATTCCCCAATTTTTTCAAACACTACTCACAAATCGCCGCCACGTTTTTCCTTTTTCCGTTTCAGACGCCATTCAATACGGAGCCACCGCGTTCTGCCTTGGTTGCCTCCTACGTCACCCCTCCCGATTTCTTTTACAAGAGGAATCACAGTCCGATACCCATCGTTGAGGACATAAACAGATACTCCGTGTTCGTGTCCGGTTTGCTGGAGCGTCCCAAACAGCTCATGATGAAAGATATCTGCTCTTTGTATCGATTTACCTCTAGAATGGATCTTTTACCTCCTTGTATCGGTTCATCGTCAACTGGGAATAGTAAAGGTCGATCAAATGTTTGGGAACATTTTACTAAACAAGAACCTTATTCTGAGAAGAAGGCTAAATGCAATTATTGTGGTGATTTGATTAAATATTCGGGTGGAACAAGCGAGATGAGGAATCATTTGATGAGATGCAAAGAAAATCCTAATAGAGAAGCATTCAAAAGGCAAAAGCTTTCATCATCAACTACAGAAGTTAGTGTTAGCCATTCACCAACTGTTTCTAAATTTGACCAAAATGCATCTCGAATGAAGTTGGTGAAGATGTTTGCGGAGTCCGAGCTTCCTTTTCGATTTGTGGAAAACAAGGGCTTCCGTGACTTTGTATGGTCCTTGCAACCACGATTTGAACTCCCATCCCGCACTACATTGAGGCGTGAAATGTGGGAACTCTATGAAGAGGAAAAAGCAAAGTTGAAAATTTTTCTGTCAAAGCAGTGTGAGAGGGTTTGTTTAACCACAGACACTTGGACTTCAATCCAAAACCTAAATTACATGAGTTTAACAGCTCACTTTATTGATAAGGATTGGAAACTTCAAAAGAAAATTTTGAATTTTTCTCAAACAGCGGGACATTCAGGGGAGCTCATTGCTAAACATGTTGAGGCTTGTTTGAATAATTGGGAGTTGAAGCGAGTCCTTAGTATCACTGTGGATAATGCTACAGCAAATGATGTTGGGGTCCAATACCTCAAAAGAAGGATGTTATCCTGGAATTGTCTTGTCTTAAAGGGAGAATATGTTCATATGCGTTGTTGTGCGCATATATTGAGTTTGATTGTGAAGGATGGCCTAAAAGAGATCAAAGATTCAATTTCAAAAATCCGGGGTGCAGTTAAATATGTAAAATCTTCTCCCGCTAGATTTGCTAGATTCAAGGGCTGTGTTGAACAAGAAGGAATTTCTTATCAAGGTATTGTTTGTCTTGACGTTGAAACCAGGTGGAATTCAACTTACTTAATGTTAGAGGCAAGCTTGAAGTACAAAGATGCCTTTGTCTTGCTAGATATGCAAGATAAGAAATGGCCAAAAGTAATAGTGGTGTTTGGAATCGGTAAAAGGATTCGACAATATTCTGAGAGTGGTGATGTAAGCATAAAACTGATGGCAATGAGGATGAAGGGCAATGATAGGACATCCCTACTTGAAGAGGATGAGGCTGCTGATGTATTTACATCTGAGGATCAATGGGAAAGGAGGAAAAAACGCTCTGCAGTGGGCACGCCTGATTACTTAGCCCCAGAGATACTTTTGGGAACTGGACTTTTGTCATTATTTGGGCAGTTTAGAGAAAACATGATTTCCCTTATGTGTAGAATTAAATATTACAAATTGATTGTTATTCTTTATAGTGAAATTAGGGGACTGAGACCGGGTTGTCGATTTACAAAGCGTTTGGATCAGAAGGGAGCAAACTTTTGTACCCGGACCACACATGATGATAATGCCATAACAAATGCAATTGAAATATATGACAACTTGAGTGGCGCAACTCATATTATTGCTTCCAATAATGTTTGTTGTGTGAGAGAATATGACACAGAAAGGTTTCAGCTTTTGAATAACTTCCAGTTCTCTTGGCCAATGAATGATGGAGATGAGCTCAGTGGTCTACATTGCTTTAGGCATCTTAGAGATCATGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAAAGGAGAAGATTCAGGGCCGGAAAGTGAACCTTTCTGGTTGCCCGCAAATAACATCTACAATACTTCGACTGTCACTCATCCCTCAATCACATTTAACATATCCCATGCAAAAGAAGATTATAGAGAAGTTATTTATTAGTTGTGAACATCCTGTAAGAGATAGATGGGTGTTTCCACAAAATCTGTCAGAAGAAACCATGACCTTTGAAGCAGTTCAGGAGGTGGATATCTCTAAGTGTCAAAATTTGCATGTTGAACTTGCTGTTGATTGCTTCCGCAAATCCTTTCCTTCTTTAAGAACATTGAAAGCAGGTTATCTTTTGAACATTGGGACAACCAGCTTCCTTCAGTTATTGGAGAAATGTCCGCTGGTTTGTGAAATTGACTTGACTGTTGATATTACCCCACTGATTCCAGCATCAGTTACAGTTTTATCCTCTAGTCCGGCTGAGATACAGCCAGTGCCAGAGAAGACCTCTAGTGTTAAATATGAAGCAGTGCAAATCATGTCATTTAATGAATTTGGACCTCCTCTTTCTAATGTTACAAAACTCACATTGGAAGGAAGAACTGATGTCAGTGGTAGGAGGTTTTTCTGGTGA 2790 0.4025 MCNTIFRLPLTYGVGHTVRCGLGFESSFSRLTAPSDYSQSLRVTLLFLSTPRQVNLLSLSLSIFPNFFKHYSQIAATFFLFPFQTPFNTEPPRSALVASYVTPPDFFYKRNHSPIPIVEDINRYSVFVSGLLERPKQLMMKDICSLYRFTSRMDLLPPCIGSSSTGNSKGRSNVWEHFTKQEPYSEKKAKCNYCGDLIKYSGGTSEMRNHLMRCKENPNREAFKRQKLSSSTTEVSVSHSPTVSKFDQNASRMKLVKMFAESELPFRFVENKGFRDFVWSLQPRFELPSRTTLRREMWELYEEEKAKLKIFLSKQCERVCLTTDTWTSIQNLNYMSLTAHFIDKDWKLQKKILNFSQTAGHSGELIAKHVEACLNNWELKRVLSITVDNATANDVGVQYLKRRMLSWNCLVLKGEYVHMRCCAHILSLIVKDGLKEIKDSISKIRGAVKYVKSSPARFARFKGCVEQEGISYQGIVCLDVETRWNSTYLMLEASLKYKDAFVLLDMQDKKWPKVIVVFGIGKRIRQYSESGDVSIKLMAMRMKGNDRTSLLEEDEAADVFTSEDQWERRKKRSAVGTPDYLAPEILLGTGLLSLFGQFRENMISLMCRIKYYKLIVILYSEIRGLRPGCRFTKRLDQKGANFCTRTTHDDNAITNAIEIYDNLSGATHIIASNNVCCVREYDTERFQLLNNFQFSWPMNDGDELSGLHCFRHLRDHATKDCVAKTLKRLKEKIQGRKVNLSGCPQITSTILRLSLIPQSHLTYPMQKKIIEKLFISCEHPVRDRWVFPQNLSEETMTFEAVQEVDISKCQNLHVELAVDCFRKSFPSLRTLKAGYLLNIGTTSFLQLLEKCPLVCEIDLTVDITPLIPASVTVLSSSPAEIQPVPEKTSSVKYEAVQIMSFNEFGPPLSNVTKLTLEGRTDVSGRRFFW 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01080 929 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 163 509 - -
Vimu5g01080 929 Gene3D - 50 181 IPR036374 -
Vimu5g01080 929 SMART bed5 169 217 - -
Vimu5g01080 929 ProSiteProfiles Zinc finger BED-type profile. 169 222 IPR003656 GO:0003677
Vimu5g01080 929 SUPERFAMILY Hermes dimerisation domain 241 307 - -
Vimu5g01080 929 SUPERFAMILY beta-beta-alpha zinc fingers 172 217 IPR036236 -
Vimu5g01080 929 SUPERFAMILY Ribonuclease H-like 316 511 IPR012337 -
Vimu5g01080 929 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 81 154 IPR036374 -
Vimu5g01080 929 Pfam BED zinc finger 172 213 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01080 Vimu-Chr5 17840471 17851992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01080 548 590 AGC Kinase Gene Family AT3G17850 76.744 6.16e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01080 - - ccaj:114915262 688.723