Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01070 ATGGTTGATCAAGCAGCACTGACTGGGGAGTCACTTCCAGTTACTAAGCATCCAGGGCAAGAAGTGTTCTCTGGATCAACTTGTAAACAAGGAGAGATTGAAGCCGTTGTGATTGCCACTGGTGTGCACACATTCTTTGGAAAGGCAGCACACTTGGTGGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTTACTGCAATTGGAAACTTCTGCATCTGTTCCATTGCGGTTGGTATGCTGGCTGAGATCATAGTGATGTACCCAATTCAACACCGCAAGTACAGGGATGGAATTGACAACATGTTGGTTCTCTTGATTGGAGGTATTCCCATTGCTATGCCTACTGTGTTGTTTGTGACAATGGCCATCGGTTCTCACAAGCTCTCTCAGCAAGGTGCCATCACCAAGAGAATGACTGCCATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGACAAAACAGGAACACTCACCCTCAACAAACTCACTGGCACGACGGCGACCCCAGCGGCAGTCAGTGGTACCGGCAGCACCCATCTCGCTTTTCTATGGCGGCGGCTCGTGACGGCGGTGATGGAGAAACAGTGGCAATCGACGTTCGAGGGTGGAAGACTCCAACCCTAG 633 0.4992 MVDQAALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNMLVLLIGGIPIAMPTVLFVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTGTTATPAAVSGTGSTHLAFLWRRLVTAVMEKQWQSTFEGGRLQP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01070 210 NCBIfam HAD-IC family P-type ATPase 1 174 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g01070 210 Gene3D - 41 149 - -
Vimu5g01070 210 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 148 IPR023298 -
Vimu5g01070 210 PANTHER CALCIUM-TRANSPORTING ATPASE 2 171 - -
Vimu5g01070 210 Gene3D - 165 180 IPR023299 GO:0000166
Vimu5g01070 210 PRINTS P-type cation-transporting ATPase superfamily signature 153 167 - -
Vimu5g01070 210 PRINTS P-type cation-transporting ATPase superfamily signature 3 17 - -
Vimu5g01070 210 Pfam E1-E2 ATPase 2 132 - -
Vimu5g01070 210 ProSitePatterns E1-E2 ATPases phosphorylation site. 155 161 IPR018303 -
Vimu5g01070 210 SUPERFAMILY Calcium ATPase, transduction domain A 1 53 IPR008250 -
Vimu5g01070 210 FunFam Phospholipid-transporting ATPase IC 150 162 - -
Vimu5g01070 210 Gene3D - 2 40 - -
Vimu5g01070 210 Gene3D - 150 164 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01070 Vimu-Chr5 17369135 17369767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01070 2 166 Primary Pumps ATPases AT2G18960 93.333 1.28e-106 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01070 K01535 - vra:106765894 395.586