Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01065 ATGGCGACGAGAGCAGCAGTGGCGGCGCCTCGCGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCATTCCTACGCCGCCTGCGGGCGCTGTCCCCACTCCCGCACGACCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGCTTATCTGCTGTTTCTGATAGATATTCTGTAAGAAAGGAAGAAGCAGAGAAGAGAGAAGAGAGAAAGCTATACCGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGTGAAGTTGTTCATGCAAGGGTGGTAGCTGATCGGGTTTCAGGCTATTCTAAGGGGTTTGGTTTTGTGCAATATGCAACAATAGAAGAGGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCTAGACCAAGACCACCTCCAGGACATCTAAATAACAGCAGTAATCCGTTTGGCCGGCAGTGA 510 0.4863 MATRAAVAAPRVLRRFFCSNSASSTFPFIPTPPAGAVPTPARPTAEPNTNLFVSGLSAVSDRYSVRKEEAEKREERKLYRLSKRTTTEKLREEFSKFGEVVHARVVADRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGHLNNSSNPFGRQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01065 169 Gene3D - 31 158 IPR012677 -
Vimu5g01065 169 SMART rrm1_1 50 148 IPR000504 GO:0003723
Vimu5g01065 169 PANTHER NUCLEOLAR PROTEIN 8 20 159 - -
Vimu5g01065 169 SUPERFAMILY RNA-binding domain, RBD 80 165 IPR035979 GO:0003676
Vimu5g01065 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 152 IPR000504 GO:0003723
Vimu5g01065 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01065 Vimu-Chr5 17254317 17258379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01065 22 154 Eukaryotic Initiation Factors Gene Family AT3G11400 30.370 1.50e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01065 - - gmx:100784609 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01065 5 17254317 17258379 Vimu5g01065 5 17254317 17258379 ECH