Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01055 ATGCAATTGGATCAAGGGCAGAGGAGGTCAGATTCAGATGATGAAAAACAAGAAGATTTTGAAGGAGGGAGGAACCAGAGAAAGAGACAAAAAAACGAAGAATCCTTTAAACAACGAACCTCAATGACAGAAGAAATGACAGAAGCTACGACTAACCTGATTCTAGCTGTATTATCCCTCCACACCCCTCCACGAACCACCACCCCTACGGCGCACAAGCCTCACGCGCACAGCCACGAACCACCACCCCACCTGCAACACGCACAACGAACCTCAATGAGACCAGACAGAACGGACAGACACATAATGCCACCGGAAAGACAGAGAGAACGCCTTAGGGTTAGGGCTTTGGGTAGAGGAGAACGAGAATTTCTGAAATTTGGGCAAAACAAGATTAGGTTTTGGAGCAAAGGGGAAGGGTTTTGGAGGAGCAAAGGGGAATCACCGTGTGATGGAATATACCTGAAAGGGGACGAGAGTTCTGAAGTCGTGGAGGGGACGAGAGCAAAGGGGTATTTTGGCTCGAAGAGTGGAGGGAAACTGAAGAACTTACCAACGGTCCTTTGGCCCTCGGTAATGCCCGGGCTGGAGGCCCTCGGTAATATCTCGCAGCTAATTCCTCATTTTACTGTAGTGACTCTTCGTACGTTGAAGATTGCATTTTCTGATCATTCAGAGGAGAAGAGGCTGAGAAGGAGGTGGTGGAGCATGAAATTGGTAACTGCTGCACGAAGTTGTAATGTCAATAAACAACTCCCAATACAGGGAATTGGTAATTGGGTTGGAGGATTTTTTAGAGATGATGATTCAACATCTGCAGATGATGAAATTAGAGAGGTTAATGAAGAAGATGAAATTGAAGAGATCTTGAATGAACCTTTGCTTGAAGGCGAATATGTCAATAACTCAACTCTTTACAAAGGAAAATTGTTTAATAGCGACACCGATGCTTACAATTTTTATTGTTTATTTGCAAAGACTTCTGGAGGTGTTGCTAAACAAAGAAAAACTATTGCTGAAGTAGAAAAACAAAGGAAACGAAAAAGTTCCAGGTGTAATTGTAGTGCAAAATTGATGATATCTAAAAGAACATTTGGCTTCGAGGAAAAATGGATGGTTACATGTTTCGAAAACTCTCATAATCATGCATTATTAGATGAGAAAGCTGGTCGTGATATCCCTATTAACGATCAAGCTCGTATATTATTATTGTCGAAAGCTGGTTGCTCGGTAAGTCTCATTATGAGAGTGCTTGAAGCGGAGAAAGGGATAGAGACAGGACATCTACCATTTTTTGATAGAGATATTAGAAATTTTATTATATCTCAAAGTAGCATTGATAAAGAGAACGACGCTTCAGATGTTCTCAAATTATGCAAAGATTTGAAAGACAATGATGATGCTTTCCAATATGATTTTACATTGGATGAAAGTAACAAGTTGGAACATATTATTTGGGTATCTGGTGATTCGATACGAGCATATGAAGCTTTTGGGGATGTGGTTGTCTTTGATACTACGTATCGGATTAATCGTTATGATATGCCTCTTGGACTAAGGGTTGGAGTTAATAATCATGGAAGTTCCATTTTTTTTGGTTGTGTTCTATTAAGGGATGAGAAGATACCTTCCTTCACATGGGCTTTAAAGAGTTTTGTACGCTTTGTGAAAGGAAAATGTCCACAAACAATTCTAACTTATCAAGACCATGCACTTAAAGAAGCTGTTTCAACAGAATTGCCAAATACAAAGCATGCCTTTTGCATATGGCATATTGCAACAAAGTTGCCAACTTGGTTTTCTTTCCTTTTGGGTACAAAATATGATGACTTCAAAACTGAGTTCTATAGACTATATAATTTAGAGTGTGAAAGTGATTTTGAACACCAATGGGATTTGATGGTTGGACGCTTTGATTTAAGTAATAACACATACATTGAGGCATTGTATTTTCATCGTCAATTTTGGGCCTTAGCTTATTTGAAAGAATTCTTTTTTGCTGGGATGACGACAACCGGACGTTCAGAATCTATAAATTCATATATTAAAAAATTCTTGGATGCTAACACGAGTTTGGTGGACTTTGTGAATCAAGATCATAATCCTCTAATGAAAATGAGTTTTCCGATTAAGGAACATGCTGCATCCATACTCACACCATATGCCTTTGAGTTGCTTCAACATGAGATTGAGTTATCTTCAAAATATGCAGCAACTATGATTGACAATGACTCTTACTTGTTACGACATCATACCAAACTTGATGGAGGTCGTTCTAATGATTATTTTAGCATTCTAGAAGAATATATTCCTTCTCGATGGAGAAGAGAAAGCTCATTGATCCCACAATCAAGATACATAATCAACTATAATGATAACTCCTCTGTTGAGTTTCGATCACTCGTGCAATGTTTAGAGGTTGAATCTTTAAAGACCAAAGATCGAGTTGAAGTAGCTACTAAAGAGTTAAAGAAAGTCATTCACTGTTTAAAAGGCATGCCTGAAGTTCAAGAAAATTCAATTGATCTAGAACATGGTGTTTTGAATGTTGATGAGTGTGATGTTGAAAATCCTATCACTTCTAAAACAAAAGGTCGACCAAGAGGATCAAGGGCAAAAGGAGGAGTTGAAGCTGCAAAGAAGCCTCGTCATTGTCATTATCCTAATTGTGGCGGAACCGATCATGACTCACGAAATTGTCCAATCAAAAGGAAGAAAGACTCATTATTAGCTTCTCAATCATCTCCTAAAAAGTAA 2757 0.3874 MQLDQGQRRSDSDDEKQEDFEGGRNQRKRQKNEESFKQRTSMTEEMTEATTNLILAVLSLHTPPRTTTPTAHKPHAHSHEPPPHLQHAQRTSMRPDRTDRHIMPPERQRERLRVRALGRGEREFLKFGQNKIRFWSKGEGFWRSKGESPCDGIYLKGDESSEVVEGTRAKGYFGSKSGGKLKNLPTVLWPSVMPGLEALGNISQLIPHFTVVTLRTLKIAFSDHSEEKRLRRRWWSMKLVTAARSCNVNKQLPIQGIGNWVGGFFRDDDSTSADDEIREVNEEDEIEEILNEPLLEGEYVNNSTLYKGKLFNSDTDAYNFYCLFAKTSGGVAKQRKTIAEVEKQRKRKSSRCNCSAKLMISKRTFGFEEKWMVTCFENSHNHALLDEKAGRDIPINDQARILLLSKAGCSVSLIMRVLEAEKGIETGHLPFFDRDIRNFIISQSSIDKENDASDVLKLCKDLKDNDDAFQYDFTLDESNKLEHIIWVSGDSIRAYEAFGDVVVFDTTYRINRYDMPLGLRVGVNNHGSSIFFGCVLLRDEKIPSFTWALKSFVRFVKGKCPQTILTYQDHALKEAVSTELPNTKHAFCIWHIATKLPTWFSFLLGTKYDDFKTEFYRLYNLECESDFEHQWDLMVGRFDLSNNTYIEALYFHRQFWALAYLKEFFFAGMTTTGRSESINSYIKKFLDANTSLVDFVNQDHNPLMKMSFPIKEHAASILTPYAFELLQHEIELSSKYAATMIDNDSYLLRHHTKLDGGRSNDYFSILEEYIPSRWRRESSLIPQSRYIINYNDNSSVEFRSLVQCLEVESLKTKDRVEVATKELKKVIHCLKGMPEVQENSIDLEHGVLNVDECDVENPITSKTKGRPRGSRAKGGVEAAKKPRHCHYPNCGGTDHDSRNCPIKRKKDSLLASQSSPKK 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01055 918 Pfam FAR1 DNA-binding domain 328 385 IPR004330 -
Vimu5g01055 918 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 301 828 IPR031052 GO:0006355
Vimu5g01055 918 MobiDBLite consensus disorder prediction 870 905 - -
Vimu5g01055 918 Pfam MULE transposase domain 501 594 IPR018289 -
Vimu5g01055 918 Coils Coil 331 351 - -
Vimu5g01055 918 MobiDBLite consensus disorder prediction 858 918 - -
Vimu5g01055 918 MobiDBLite consensus disorder prediction 73 106 - -
Vimu5g01055 918 MobiDBLite consensus disorder prediction 1 46 - -
Vimu5g01055 918 MobiDBLite consensus disorder prediction 63 106 - -
Vimu5g01055 918 MobiDBLite consensus disorder prediction 7 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01055 Vimu-Chr5 17099432 17107218 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g01055 MULE 7.6e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01055 - - vra:106766304 890.567