Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01049 ATGGCTCCTGAGTACGCTATGCAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTAGTTCTAGAAACCATTTGTGGAAGAAAAACAATGGATTCTATCTGTCAGAACATGATGAAACTCTTCTTTTATACGAAAATCTTTGGAGTTGATGGACCCAATGCTGGAAAATCCTTTAAAGCCAGTGAAGTTGAGAAGTGCATACACATTGCATTGTTGTGTGTTCAAGAAAATGCAACTGACAGATTGACCCTTCCAAAACCCAAGCACCCAGCATTTTCTGTTGGAAGAAAGTTCTCAGAGGAAGTGTGCATGCTGGCCAGCAAAAGTGTGGCAGGTTATGACTGGTGTAGGTGCGGGGGTGGAAAGTAG 381 0.4199 MAPEYAMQGLFSVKSDVFSFGVLVLETICGRKTMDSICQNMMKLFFYTKIFGVDGPNAGKSFKASEVEKCIHIALLCVQENATDRLTLPKPKHPAFSVGRKFSEEVCMLASKSVAGYDWCRCGGGK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01049 126 Pfam Protein tyrosine and serine/threonine kinase 1 87 IPR001245 GO:0004672|GO:0006468
Vimu5g01049 126 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 88 - -
Vimu5g01049 126 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vimu5g01049 126 ProSiteProfiles Protein kinase domain profile. 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g01049 126 SUPERFAMILY Protein kinase-like (PK-like) 1 89 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01049 Vimu-Chr5 17008460 17010613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01049 1 88 Receptor kinase-like Gene Family AT4G23280 49.485 4.27e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g01049 PK_Tyr_Ser-Thr 2.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01049 - - pvu:PHAVU_011G193900g 115.546